ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 7617.00 1.71 53.08 96.86 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 207.00 0.05 1.44 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 29.00 0.01 0.20 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 5742.00 1.29 40.01 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 850.00 0.19 5.92 83.66 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 37.89 0.01 0.26 35.75 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 123.00 0.03 0.86 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 675.00 0.15 4.70 66.05 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 204.00 0.05 1.42 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 72.00 0.02 0.50 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 188.00 0.04 1.31 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 1097.00 19.37 7.64 100.0 SNHG14-315 lncRNA Karpas-422 (Cell line)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 403.00 7.12 2.81 96.18 SNHG14-315 lncRNA Karpas-422 (Cell line)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 733.00 12.95 5.11 87.78 SNHG14-315 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 1372.00 0.39 9.56 100.0 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 70776.80 20.22 493.23 28.23 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 386.00 0.11 2.69 100.0 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 957.00 0.27 6.67 100.0 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 213285.87 60.92 1486.35 76.16 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 10655.00 3.04 74.25 62.62 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 301.00 0.09 2.10 100.0 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 8584.00 2.45 59.82 100.0 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 159.00 0.05 1.11 100.0 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 1.00 0.00 0.01 100.0 SNHG5-273 lncRNA Karpas-422 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 20675.00 5.91 144.08 91.66 SNHG5-273 lncRNA Karpas-422 (Cell line)