ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 434.00 0.31 3.02 100.0 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 85003.30 61.50 592.37 69.7 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 267.00 0.19 1.86 100.0 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 1144.00 0.83 7.97 100.0 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 39985.68 28.93 278.65 34.27 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 2648.00 1.92 18.45 100.0 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 603.00 0.44 4.20 100.0 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 1746.00 1.26 12.17 100.0 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 2542.00 1.84 17.71 100.0 MIR17HG-214 lncRNA Karpas-422 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 14594.00 2.07 101.70 100.0 SNHG32-223 lncRNA Karpas-422 (Cell line)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 743.00 0.11 5.18 100.0 SNHG32-223 lncRNA Karpas-422 (Cell line)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 372.00 0.05 2.59 100.0 SNHG32-223 lncRNA Karpas-422 (Cell line)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 5370.00 0.76 37.42 88.18 SNHG32-223 lncRNA Karpas-422 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 680299.00 96.32 4740.87 100.0 SNHG32-223 lncRNA Karpas-422 (Cell line)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 42207.00 90.25 294.13 99.08 SNHG32-227 lncRNA Karpas-422 (Cell line)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 2464.00 5.27 17.17 100.0 SNHG32-227 lncRNA Karpas-422 (Cell line)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 114.00 0.24 0.79 100.0 SNHG32-227 lncRNA Karpas-422 (Cell line)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 107.00 0.23 0.75 100.0 SNHG32-227 lncRNA Karpas-422 (Cell line)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 683.00 76.91 4.76 100.0 B4GALT1-203 nonsense mediated decay Karpas-422 (Cell line)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 117.00 0.96 0.82 100.0 ENST00000722183 lncRNA Karpas-422 (Cell line)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 993.00 8.14 6.92 75.98 ENST00000722183 lncRNA Karpas-422 (Cell line)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 2320.00 19.03 16.17 100.0 ENST00000722183 lncRNA Karpas-422 (Cell line)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 2.00 100.00 0.01 100.0 MIR34BHG-202 lncRNA Karpas-422 (Cell line)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 924.00 42.08 6.44 47.58 THBS3-AS1-228 lncRNA Karpas-422 (Cell line)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 673.00 85.08 4.69 100.0 MIR200CHG-202 lncRNA Karpas-422 (Cell line)