ENCFF004YAN
Library Details
| Organism: | Homo Sapiens |
|---|---|
| Biosample: | Karpas-422 (Cell line) |
| GEO DB ID: | Not available |
| ENCODE Experiment ID: | ENCSR905KHW |
| Description: | Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning. |
|---|---|
| Author: | Thomas Gingeras, CSHL |
sncRNAs in this Library
| Precursor Transcript ID | sncRNA Name | sncRNA position in precursor | Expression | Expression Fraction | Expression (CPM) | Prominence | Transcript Name | Transcript Type | Biosample |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000387347.2 | ENST00000387347.2_1357_1376_+ | 1357–1376 | 66.00 | 0.07 | 0.46 | 100.0 | MT-RNR2-201 | Mt rRNA | Karpas-422 (Cell line) |
| ENST00000387365.1 | ENST00000387365.1_1_51_+ | 1–51 | 6851.00 | 23.64 | 47.74 | 87.36 | MT-TI-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387365.1 | ENST00000387365.1_1_58_+ | 1–58 | 7590.00 | 26.19 | 52.89 | 100.0 | MT-TI-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_36_+ | 1–36 | 19837.00 | 3.88 | 138.24 | 71.27 | MT-TQ-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_32_+ | 1–32 | 369980.09 | 72.34 | 2578.32 | 83.0 | MT-TQ-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_55_+ | 1–55 | 1366.00 | 0.27 | 9.52 | 100.0 | MT-TQ-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_30_+ | 1–30 | 99332.42 | 19.42 | 692.23 | 30.64 | MT-TQ-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387377.1 | ENST00000387377.1_1_31_+ | 1–31 | 38200.00 | 58.96 | 266.21 | 91.34 | MT-TM-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387377.1 | ENST00000387377.1_1_51_+ | 1–51 | 1390.00 | 2.15 | 9.69 | 100.0 | MT-TM-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387405.1 | ENST00000387405.1_1_24_+ | 1–24 | 7398.00 | 48.16 | 51.56 | 100.0 | MT-TC-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_37_+ | 1–37 | 6319.00 | 7.09 | 44.04 | 65.31 | MT-TY-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_32_+ | 1–32 | 18070.00 | 20.27 | 125.93 | 84.47 | MT-TY-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_50_+ | 1–50 | 29.00 | 0.03 | 0.20 | 100.0 | MT-TY-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_28_+ | 1–28 | 19984.00 | 22.42 | 139.26 | 100.0 | MT-TY-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_65_+ | 1–65 | 21834.00 | 24.49 | 152.16 | 100.0 | MT-TY-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_56_+ | 1–56 | 1503.00 | 1.69 | 10.47 | 100.0 | MT-TY-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387419.1 | ENST00000387419.1_1_51_+ | 1–51 | 170.00 | 10.86 | 1.18 | 100.0 | MT-TD-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_52_+ | 1–52 | 139768.00 | 56.93 | 974.02 | 100.0 | MT-TK-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_28_+ | 1–28 | 2401.00 | 0.98 | 16.73 | 100.0 | MT-TK-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_31_+ | 1–31 | 36.00 | 0.01 | 0.25 | 100.0 | MT-TK-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_58_+ | 1–58 | 64470.00 | 26.26 | 449.28 | 100.0 | MT-TK-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_26_+ | 1–26 | 3278.00 | 24.82 | 22.84 | 100.0 | MT-TS2-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_53_+ | 1–53 | 117.00 | 0.89 | 0.82 | 100.0 | MT-TS2-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_20_+ | 1–20 | 4532.00 | 34.32 | 31.58 | 87.0 | MT-TS2-201 | Mt tRNA | Karpas-422 (Cell line) |
| ENST00000387456.1 | ENST00000387456.1_1_31_+ | 1–31 | 6153.00 | 8.19 | 42.88 | 100.0 | MT-TL2-201 | Mt tRNA | Karpas-422 (Cell line) |