ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 4860.00 0.87 33.87 100.0 MT-TE-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 2887.00 0.52 20.12 70.38 MT-TE-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 5880.00 1.05 40.98 100.0 MT-TE-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 12660.00 2.27 88.22 70.75 MT-TE-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 137.00 0.02 0.95 100.0 MT-TE-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 380910.00 68.30 2654.49 92.24 MT-TE-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 5235.00 0.94 36.48 42.67 MT-TE-201 Mt tRNA Karpas-422 (Cell line)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 1.00 50.00 0.01 100.0 MIR196A1-201 miRNA Karpas-422 (Cell line)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 1186.00 2.55 8.26 100.0 MT-RNR1-201 Mt rRNA Karpas-422 (Cell line)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 2.00 0.00 0.01 100.0 MT-RNR1-201 Mt rRNA Karpas-422 (Cell line)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 642.00 80.75 4.47 100.0 MIR454-201 miRNA Karpas-422 (Cell line)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 361.00 66.24 2.52 100.0 MIR501-201 miRNA Karpas-422 (Cell line)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 3900.00 88.54 27.18 100.0 MIR769-201 miRNA Karpas-422 (Cell line)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 214.00 71.81 1.49 100.0 KRTAP19-1-201 protein coding Karpas-422 (Cell line)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 18.00 27.27 0.13 100.0 MIR708-201 miRNA Karpas-422 (Cell line)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 3.00 100.00 0.02 100.0 MIR509-3-201 miRNA Karpas-422 (Cell line)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 2161.00 94.78 15.06 100.0 MIR301B-201 miRNA Karpas-422 (Cell line)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 8954.00 93.44 62.40 99.15 RNU1-82P-201 snRNA Karpas-422 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 218.00 2.43 1.52 100.0 SNORD66-201 snoRNA Karpas-422 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 1922.00 21.43 13.39 100.0 SNORD66-201 snoRNA Karpas-422 (Cell line)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 705.00 7.86 4.91 100.0 SNORD66-201 snoRNA Karpas-422 (Cell line)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 1745.00 19.45 12.16 69.0 SNORD66-201 snoRNA Karpas-422 (Cell line)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 730.00 49.93 5.09 100.0 U3.17-201 snoRNA Karpas-422 (Cell line)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 4284.00 72.71 29.85 100.0 SNORD17-201 snoRNA Karpas-422 (Cell line)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 4475.00 52.02 31.19 100.0 SNORD72-201 snoRNA Karpas-422 (Cell line)