ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 153.00 84.53 1.07 100.0 MIR660-201 miRNA Karpas-422 (Cell line)
ENST00000385236.1 ENST00000385236.1_15_37_+ 15–37 3.00 100.00 0.02 100.0 MIR125B1-201 miRNA Karpas-422 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 92225.55 63.68 642.70 67.84 MIR182-201 miRNA Karpas-422 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 23775.90 16.42 165.69 20.99 MIR182-201 miRNA Karpas-422 (Cell line)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 2.00 100.00 0.01 100.0 MIR100-201 miRNA Karpas-422 (Cell line)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 4975.00 94.82 34.67 100.0 MIR301A-201 miRNA Karpas-422 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 5.00 100.00 0.03 100.0 MIR130A-201 miRNA Karpas-422 (Cell line)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 14477.00 98.43 100.89 99.42 MIRLET7F2-201 miRNA Karpas-422 (Cell line)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 100.00 46.08 0.70 100.0 MIR652-201 miRNA Karpas-422 (Cell line)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 1078.00 39.99 7.51 100.0 MIR140-201 miRNA Karpas-422 (Cell line)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 1404.00 44.96 9.78 76.68 MIR106B-201 miRNA Karpas-422 (Cell line)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 473.00 15.15 3.30 100.0 MIR106B-201 miRNA Karpas-422 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 19052.00 21.52 132.77 95.18 SNORD83A-201 snoRNA Karpas-422 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 63891.00 72.18 445.24 98.51 SNORD83A-201 snoRNA Karpas-422 (Cell line)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 171.00 54.81 1.19 100.0 SNORD41-201 snoRNA Karpas-422 (Cell line)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 391.00 1.42 2.72 15.36 MT-TF-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 75.00 0.27 0.52 100.0 MT-TF-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 930.00 3.37 6.48 58.38 MT-TF-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 1354.00 5.80 9.44 100.0 MT-TV-201 Mt tRNA Karpas-422 (Cell line)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 15.00 0.02 0.10 100.0 MT-RNR2-201 Mt rRNA Karpas-422 (Cell line)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 36.00 0.04 0.25 100.0 MT-RNR2-201 Mt rRNA Karpas-422 (Cell line)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 66.00 0.07 0.46 100.0 MT-RNR2-201 Mt rRNA Karpas-422 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 480.00 0.49 3.35 80.94 MT-RNR2-201 Mt rRNA Karpas-422 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 11.00 0.01 0.08 100.0 MT-RNR2-201 Mt rRNA Karpas-422 (Cell line)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 230.00 0.23 1.60 100.0 MT-RNR2-201 Mt rRNA Karpas-422 (Cell line)