ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 1.00 0.00 0.00 100.0 SNHG5-273 lncRNA GM23338 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 8355.00 4.13 10.03 93.44 SNHG5-273 lncRNA GM23338 (Cell line)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 1615.00 4.91 1.94 83.25 SNHG14-323 lncRNA GM23338 (Cell line)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 15.00 62.50 0.02 83.33 MEG8-251 lncRNA GM23338 (Cell line)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 2.00 0.00 0.00 100.0 SNHG14-336 lncRNA GM23338 (Cell line)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 50582.00 41.02 60.70 82.63 SNHG14-336 lncRNA GM23338 (Cell line)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 64456.00 52.28 77.35 59.93 SNHG14-336 lncRNA GM23338 (Cell line)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 60843.00 91.79 73.01 98.78 SNHG14-341 lncRNA GM23338 (Cell line)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 2.00 0.13 0.00 100.0 NCL-211 retained intron GM23338 (Cell line)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 1383.00 67.93 1.66 100.0 FMN2-209 protein coding CDS not defined GM23338 (Cell line)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 5.00 0.03 0.01 100.0 LINC02739-203 lncRNA GM23338 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 3411.00 20.01 4.09 100.0 LINC02739-203 lncRNA GM23338 (Cell line)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 5434.00 31.88 6.52 100.0 LINC02739-203 lncRNA GM23338 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 453.00 2.66 0.54 65.65 LINC02739-203 lncRNA GM23338 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 771.00 4.52 0.93 100.0 LINC02739-203 lncRNA GM23338 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 237.00 1.39 0.28 34.35 LINC02739-203 lncRNA GM23338 (Cell line)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 96.00 51.34 0.12 100.0 MIR124-1HG-216 lncRNA GM23338 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 25.00 5.43 0.03 100.0 SNHG10-212 lncRNA GM23338 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 8740.22 5.51 10.49 14.3 SNHG19-202 lncRNA GM23338 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1.44 0.00 0.00 72.05 SNHG19-202 lncRNA GM23338 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 138567.01 87.38 166.29 94.1 SNHG19-202 lncRNA GM23338 (Cell line)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 4367.00 50.76 5.24 100.0 MIR222HG-206 lncRNA GM23338 (Cell line)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 2930.00 34.05 3.52 90.02 MIR222HG-206 lncRNA GM23338 (Cell line)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 249.00 2.89 0.30 100.0 MIR222HG-206 lncRNA GM23338 (Cell line)
ENST00000688371.3 ENST00000688371.3_458_485_+ 458–485 26045.00 18.01 31.26 100.0 MIR302CHG-205 lncRNA GM23338 (Cell line)