ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 57.00 0.00 0.07 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 113420.00 2.04 136.11 90.6 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 286.00 0.01 0.34 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 405.00 0.01 0.49 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 17.00 0.00 0.02 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 266751.00 4.81 320.12 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 4950.00 0.09 5.94 67.42 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 221.17 0.00 0.27 40.51 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 61.00 0.00 0.07 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 5622.00 0.10 6.75 58.64 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 352.00 0.01 0.42 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 5423.00 0.10 6.51 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 8182.00 0.15 9.82 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 153667.00 53.21 184.41 100.0 SNHG14-315 lncRNA GM23338 (Cell line)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 68196.00 23.61 81.84 97.77 SNHG14-315 lncRNA GM23338 (Cell line)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 52573.00 18.20 63.09 94.7 SNHG14-315 lncRNA GM23338 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 3370.00 1.67 4.04 100.0 SNHG5-273 lncRNA GM23338 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 13757.44 6.80 16.51 13.03 SNHG5-273 lncRNA GM23338 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 8612.00 4.26 10.33 100.0 SNHG5-273 lncRNA GM23338 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 1276.00 0.63 1.53 100.0 SNHG5-273 lncRNA GM23338 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 124271.10 61.42 149.13 89.62 SNHG5-273 lncRNA GM23338 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 2676.00 1.32 3.21 52.85 SNHG5-273 lncRNA GM23338 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 270.00 0.13 0.32 100.0 SNHG5-273 lncRNA GM23338 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 15471.00 7.65 18.57 100.0 SNHG5-273 lncRNA GM23338 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 333.00 0.16 0.40 100.0 SNHG5-273 lncRNA GM23338 (Cell line)