ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688371.3 ENST00000688371.3_313_335_+ 313–335 1908.00 1.32 2.29 27.09 MIR302CHG-205 lncRNA GM23338 (Cell line)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 8053.55 5.57 9.66 84.51 MIR302CHG-205 lncRNA GM23338 (Cell line)
ENST00000688371.3 ENST00000688371.3_313_333_+ 313–333 5134.00 3.55 6.16 84.3 MIR302CHG-205 lncRNA GM23338 (Cell line)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 1677.42 1.16 2.01 21.44 MIR302CHG-205 lncRNA GM23338 (Cell line)
ENST00000688371.3 ENST00000688371.3_493_514_+ 493–514 20153.00 13.94 24.18 100.0 MIR302CHG-205 lncRNA GM23338 (Cell line)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 15036.00 10.40 18.04 95.79 MIR302CHG-205 lncRNA GM23338 (Cell line)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 22801.00 15.77 27.36 88.78 MIR302CHG-205 lncRNA GM23338 (Cell line)
ENST00000688371.3 ENST00000688371.3_458_490_+ 458–490 3431.00 2.37 4.12 100.0 MIR302CHG-205 lncRNA GM23338 (Cell line)
ENST00000688371.3 ENST00000688371.3_458_481_+ 458–481 11253.00 7.78 13.50 55.3 MIR302CHG-205 lncRNA GM23338 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 2.00 66.67 0.00 100.0 MIR99AHG-370 lncRNA GM23338 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 1.00 33.33 0.00 100.0 MIR99AHG-370 lncRNA GM23338 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 5190.00 97.01 6.23 100.0 HPS4-237 retained intron GM23338 (Cell line)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 1.00 7.69 0.00 100.0 MEG8-253 lncRNA GM23338 (Cell line)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 970.00 12.98 1.16 100.0 DNAJC5-203 nonsense mediated decay GM23338 (Cell line)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 823.00 14.82 0.99 100.0 ENST00000707189 TEC GM23338 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 987.00 0.30 1.18 100.0 MIR17HG-214 lncRNA GM23338 (Cell line)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 1374.00 0.41 1.65 100.0 MIR17HG-214 lncRNA GM23338 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 124625.67 37.64 149.56 45.14 MIR17HG-214 lncRNA GM23338 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 377.00 0.11 0.45 100.0 MIR17HG-214 lncRNA GM23338 (Cell line)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 320.00 0.10 0.38 100.0 MIR17HG-214 lncRNA GM23338 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 179630.58 54.25 215.57 57.98 MIR17HG-214 lncRNA GM23338 (Cell line)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 1157.00 0.35 1.39 100.0 MIR17HG-214 lncRNA GM23338 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 1818.00 0.55 2.18 100.0 MIR17HG-214 lncRNA GM23338 (Cell line)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 1643.00 0.50 1.97 100.0 MIR17HG-214 lncRNA GM23338 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 5284.00 3.48 6.34 100.0 SNHG32-223 lncRNA GM23338 (Cell line)