ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 270243.00 4.16 324.31 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 179.00 0.00 0.21 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 67807.00 1.04 81.37 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 845550.00 13.00 1014.71 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 17802.00 0.27 21.36 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 72.00 2.04 0.09 100.0 FTX-219 lncRNA GM23338 (Cell line)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 2363.00 66.79 2.84 87.65 FTX-219 lncRNA GM23338 (Cell line)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 2038.00 6.98 2.45 35.24 CTC1-214 protein coding GM23338 (Cell line)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 1747.00 5.98 2.10 79.77 CTC1-214 protein coding GM23338 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 3165.00 10.83 3.80 60.81 CTC1-214 protein coding GM23338 (Cell line)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 3746.00 12.82 4.50 64.76 CTC1-214 protein coding GM23338 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 4163.00 14.25 5.00 87.62 CTC1-214 protein coding GM23338 (Cell line)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 1141.00 3.91 1.37 100.0 CTC1-214 protein coding GM23338 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 1203.00 4.12 1.44 100.0 CTC1-214 protein coding GM23338 (Cell line)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 1332.00 4.56 1.60 100.0 CTC1-214 protein coding GM23338 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 5263.00 6.60 6.32 75.27 ENST00000651540 lncRNA GM23338 (Cell line)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 337.00 0.42 0.40 99.12 ENST00000651540 lncRNA GM23338 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 472.00 0.59 0.57 100.0 ENST00000651540 lncRNA GM23338 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 1803.00 2.26 2.16 54.52 ENST00000651540 lncRNA GM23338 (Cell line)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 31.00 0.04 0.04 100.0 ENST00000651540 lncRNA GM23338 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 259.00 0.32 0.31 100.0 ENST00000651540 lncRNA GM23338 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 777.00 0.97 0.93 100.0 ENST00000651540 lncRNA GM23338 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 269.00 0.34 0.32 100.0 ENST00000651540 lncRNA GM23338 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 231.00 0.29 0.28 100.0 ENST00000651540 lncRNA GM23338 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 11969.00 15.01 14.36 58.11 ENST00000651540 lncRNA GM23338 (Cell line)