ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 7949.00 2.31 9.54 100.0 TAF1D-215 retained intron GM23338 (Cell line)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 322739.00 93.93 387.30 100.0 TAF1D-215 retained intron GM23338 (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 2.00 0.19 0.00 100.0 HSPA8-215 retained intron GM23338 (Cell line)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 116.00 10.87 0.14 100.0 HSPA8-215 retained intron GM23338 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 464.00 15.95 0.56 100.0 RPS2-215 retained intron GM23338 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 2.00 20.00 0.00 100.0 ENST00000548801 lncRNA GM23338 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 355.00 14.76 0.43 100.0 ENST00000554988 lncRNA GM23338 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 219.00 9.11 0.26 100.0 ENST00000554988 lncRNA GM23338 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 6.00 0.25 0.01 100.0 ENST00000554988 lncRNA GM23338 (Cell line)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 7775.00 5.36 9.33 100.0 SNHG14-220 retained intron GM23338 (Cell line)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 48269.00 33.28 57.93 100.0 SNHG14-220 retained intron GM23338 (Cell line)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 71066.00 48.99 85.28 100.0 SNHG14-220 retained intron GM23338 (Cell line)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 185.00 0.13 0.22 100.0 SNHG14-220 retained intron GM23338 (Cell line)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 3920.00 99.52 4.70 100.0 TEKT4P2-201 transcribed unprocessed pseudogene GM23338 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 68.00 0.06 0.08 100.0 RPL4-202 retained intron GM23338 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 1504.00 1.31 1.80 100.0 RPL4-202 retained intron GM23338 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 1361.00 1.18 1.63 100.0 RPL4-202 retained intron GM23338 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 94.00 0.08 0.11 100.0 RPL4-202 retained intron GM23338 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 100681.00 87.45 120.82 98.11 RPL4-202 retained intron GM23338 (Cell line)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 577.00 0.06 0.69 100.0 ENST00000563103 lncRNA GM23338 (Cell line)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 1469.00 4.80 1.76 100.0 RPL4-207 retained intron GM23338 (Cell line)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 21739.00 71.08 26.09 100.0 RPL4-207 retained intron GM23338 (Cell line)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 82260.00 14.74 98.72 85.48 ENST00000565336 lncRNA GM23338 (Cell line)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 422338.00 75.68 506.83 93.96 ENST00000565336 lncRNA GM23338 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 643.00 0.32 0.77 100.0 RBMX-210 retained intron GM23338 (Cell line)