ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 543.00 2.23 1.62 100.0 7SK.1-201 misc RNA liver (Tissue)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 2219.00 63.27 6.61 100.0 SNORD14C-201 snoRNA liver (Tissue)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 9651.00 43.45 28.77 100.0 SNORD115-44-201 snoRNA liver (Tissue)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 127.00 13.67 0.38 100.0 RNA5SP77-201 rRNA pseudogene liver (Tissue)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 111634.00 25.26 332.78 100.0 SNORD114-22-201 snoRNA liver (Tissue)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 287696.00 65.09 857.62 93.16 SNORD114-22-201 snoRNA liver (Tissue)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 2486.00 4.79 7.41 100.0 SNORD6-201 snoRNA liver (Tissue)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 45671.00 87.95 136.15 100.0 SNORD6-201 snoRNA liver (Tissue)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 326.00 4.64 0.97 100.0 RNY3-201 misc RNA liver (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 16341.00 37.50 48.71 96.87 SNORD82-201 snoRNA liver (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 1135.00 2.60 3.38 100.0 SNORD82-201 snoRNA liver (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 5750.00 13.20 17.14 91.46 SNORD82-201 snoRNA liver (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 6107.63 14.02 18.21 53.4 SNORD82-201 snoRNA liver (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 5377.49 12.34 16.03 47.02 SNORD82-201 snoRNA liver (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 937.00 2.15 2.79 100.0 SNORD82-201 snoRNA liver (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 1156.00 2.65 3.45 100.0 SNORD82-201 snoRNA liver (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 33069.00 94.64 98.58 97.3 MIR146B-201 miRNA liver (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 27.00 11.39 0.08 100.0 SNHG20-201 lncRNA liver (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 484.00 33.56 1.44 100.0 ATP5MK-205 protein coding liver (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 171.00 11.86 0.51 100.0 ATP5MK-205 protein coding liver (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 57.00 22.80 0.17 100.0 LINC01556-201 lncRNA liver (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 119.00 35.63 0.35 100.0 ATAD3A-202 protein coding liver (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 5856.00 53.40 17.46 77.47 TMC5-202 protein coding liver (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 192.00 81.70 0.57 100.0 ZMYM2-203 protein coding liver (Tissue)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 837.00 5.88 2.50 100.0 RNVU1-7-201 snRNA liver (Tissue)