ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 2176.00 0.25 6.49 100.0 RPL21-209 retained intron liver (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 119.00 28.74 0.35 100.0 GABRE-209 retained intron liver (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 34.00 0.02 0.10 100.0 RPL13A-212 retained intron liver (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 956.00 0.68 2.85 100.0 RPL13A-212 retained intron liver (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 12900.00 9.22 38.45 85.83 RPL13A-212 retained intron liver (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 97.00 0.07 0.29 10.65 RPL13A-212 retained intron liver (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 104.00 0.07 0.31 100.0 RPL13A-212 retained intron liver (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 102536.00 73.25 305.66 97.93 RPL13A-212 retained intron liver (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 6.00 0.00 0.02 100.0 RPL13A-212 retained intron liver (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 6755.00 4.83 20.14 100.0 RPL13A-212 retained intron liver (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 240.00 1.14 0.72 100.0 RPL7A-207 protein coding CDS not defined liver (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 234.00 1.12 0.70 100.0 RPL7A-207 protein coding CDS not defined liver (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 13868.00 66.15 41.34 80.77 RPL7A-207 protein coding CDS not defined liver (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 1173.00 4.50 3.50 100.0 RN7SL2-201 misc RNA liver (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 562.00 2.16 1.68 20.53 RN7SL2-201 misc RNA liver (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 24978.00 70.52 74.46 81.18 NOP56-217 protein coding CDS not defined liver (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 1931.00 5.45 5.76 81.24 NOP56-217 protein coding CDS not defined liver (Tissue)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 1.00 0.00 0.00 100.0 RABGGTB-213 protein coding CDS not defined liver (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 227.00 0.10 0.68 49.56 RABGGTB-213 protein coding CDS not defined liver (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1330.00 0.61 3.96 100.0 RABGGTB-213 protein coding CDS not defined liver (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1594.00 0.73 4.75 100.0 RABGGTB-213 protein coding CDS not defined liver (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 231.00 0.11 0.69 50.44 RABGGTB-213 protein coding CDS not defined liver (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 143310.00 65.50 427.21 93.14 RABGGTB-213 protein coding CDS not defined liver (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 42378.00 19.37 126.33 90.63 RABGGTB-213 protein coding CDS not defined liver (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 440.00 0.20 1.31 100.0 RABGGTB-213 protein coding CDS not defined liver (Tissue)