ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362400.1 ENST00000362400.1_17_95_+ 17–95 166.20 0.61 0.45 64.42 RNA5S12-201 rRNA urinary bladder (Tissue)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 816.00 26.94 2.20 100.0 Y_RNA.14-201 misc RNA urinary bladder (Tissue)
ENST00000362441.1 ENST00000362441.1_2_82_+ 2–82 260.00 32.38 0.70 100.0 SNORD115-34-201 snoRNA urinary bladder (Tissue)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 639.00 30.26 1.72 100.0 RNU5E-1-201 snRNA urinary bladder (Tissue)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 1.00 0.03 0.00 7.69 RNA5SP370-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 151.00 8.81 0.41 100.0 SNORA31-201 snoRNA urinary bladder (Tissue)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 3.00 0.09 0.01 100.0 RNA5SP389-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 47.00 1.44 0.13 87.04 RNA5SP389-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 8.00 0.25 0.02 100.0 RNA5SP389-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 109.00 3.35 0.29 89.34 RNA5SP389-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 3644.00 6.24 9.82 73.56 RNU5A-1-201 snRNA urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 725.00 1.24 1.95 100.0 RNU5A-1-201 snRNA urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 10907.99 18.67 29.40 40.02 RNU5A-1-201 snRNA urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 1810.00 3.10 4.88 77.02 RNU5A-1-201 snRNA urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 1162.00 1.99 3.13 54.99 RNU5A-1-201 snRNA urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 153.00 0.26 0.41 100.0 RNU5A-1-201 snRNA urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 497.00 0.85 1.34 31.54 RNU5A-1-201 snRNA urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 1767.00 3.02 4.76 32.73 RNU5A-1-201 snRNA urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 426.56 0.73 1.15 51.96 RNU5A-1-201 snRNA urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 1362.00 2.33 3.67 59.04 RNU5A-1-201 snRNA urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 936.00 1.60 2.52 100.0 RNU5A-1-201 snRNA urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 17715.80 30.32 47.74 67.51 RNU5A-1-201 snRNA urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 400.17 0.68 1.08 35.89 RNU5A-1-201 snRNA urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 1446.00 2.47 3.90 90.09 RNU5A-1-201 snRNA urinary bladder (Tissue)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 1793.00 3.07 4.83 77.52 RNU5A-1-201 snRNA urinary bladder (Tissue)