ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 47639.00 26.80 128.39 85.23 SNHG14-315 lncRNA urinary bladder (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 1352.00 0.69 3.64 100.0 SNHG5-273 lncRNA urinary bladder (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 63706.60 32.58 171.69 41.05 SNHG5-273 lncRNA urinary bladder (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 125.00 0.06 0.34 100.0 SNHG5-273 lncRNA urinary bladder (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 840.00 0.43 2.26 100.0 SNHG5-273 lncRNA urinary bladder (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 102209.13 52.27 275.45 61.65 SNHG5-273 lncRNA urinary bladder (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 10105.00 5.17 27.23 88.45 SNHG5-273 lncRNA urinary bladder (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 133.00 0.07 0.36 100.0 SNHG5-273 lncRNA urinary bladder (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 2635.00 1.35 7.10 100.0 SNHG5-273 lncRNA urinary bladder (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 27.00 0.01 0.07 100.0 SNHG5-273 lncRNA urinary bladder (Tissue)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 1.00 0.00 0.00 100.0 SNHG5-273 lncRNA urinary bladder (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 2939.00 1.50 7.92 98.72 SNHG5-273 lncRNA urinary bladder (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 2057.00 16.21 5.54 68.41 SNHG14-323 lncRNA urinary bladder (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 2719.00 0.37 7.33 57.27 MEG8-251 lncRNA urinary bladder (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 682767.00 93.66 1840.03 99.43 MEG8-251 lncRNA urinary bladder (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 2770.00 0.38 7.47 58.27 MEG8-251 lncRNA urinary bladder (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 19591.00 2.69 52.80 89.89 MEG8-251 lncRNA urinary bladder (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 2163.00 0.30 5.83 100.0 MEG8-251 lncRNA urinary bladder (Tissue)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 2.00 0.00 0.01 100.0 SNHG14-336 lncRNA urinary bladder (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 25383.00 59.66 68.41 85.67 SNHG14-336 lncRNA urinary bladder (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 15439.00 36.29 41.61 60.72 SNHG14-336 lncRNA urinary bladder (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 9414.00 70.64 25.37 94.46 SNHG14-341 lncRNA urinary bladder (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 7.00 0.44 0.02 100.0 NCL-211 retained intron urinary bladder (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 623.00 20.17 1.68 100.0 FMN2-209 protein coding CDS not defined urinary bladder (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 16.00 0.20 0.04 100.0 LINC02739-203 lncRNA urinary bladder (Tissue)