ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 299.00 0.02 0.81 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 1503.00 0.10 4.05 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 976.00 0.06 2.63 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 2741.00 0.18 7.39 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 176.00 0.01 0.47 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 505.00 0.03 1.36 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 18721.00 1.21 50.45 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 147.00 0.01 0.40 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 1848.00 0.12 4.98 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 44803.00 2.89 120.74 63.71 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 1274.00 0.08 3.43 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 228008.00 14.72 614.47 98.14 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 1843.00 0.12 4.97 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 958.00 0.06 2.58 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 1.00 0.00 0.00 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 129191.00 8.34 348.16 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1435.00 0.09 3.87 82.52 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 835.97 0.05 2.25 58.09 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 514.00 0.03 1.39 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1778.00 0.11 4.79 64.07 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 887.00 0.06 2.39 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 433.00 0.03 1.17 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 597.00 0.04 1.61 100.0 SNHG1-248 lncRNA urinary bladder (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 58519.00 32.92 157.71 100.0 SNHG14-315 lncRNA urinary bladder (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 46047.00 25.91 124.09 90.23 SNHG14-315 lncRNA urinary bladder (Tissue)