ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 42241.00 3.68 113.84 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 52503.00 4.57 141.49 95.86 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 95167.00 8.29 256.47 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 414.00 0.04 1.12 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 5835.00 0.51 15.73 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 24652.00 2.15 66.44 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 221.00 0.02 0.60 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 1058.00 16.87 2.85 100.0 FTX-219 lncRNA urinary bladder (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 2618.00 41.75 7.06 80.6 FTX-219 lncRNA urinary bladder (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 160.00 3.30 0.43 48.19 CTC1-214 protein coding urinary bladder (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 34.00 0.70 0.09 23.29 CTC1-214 protein coding urinary bladder (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 669.00 13.82 1.80 68.34 CTC1-214 protein coding urinary bladder (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 172.00 3.55 0.46 51.81 CTC1-214 protein coding urinary bladder (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 590.00 12.19 1.59 80.6 CTC1-214 protein coding urinary bladder (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 238.00 4.92 0.64 100.0 CTC1-214 protein coding urinary bladder (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 439.00 9.07 1.18 100.0 CTC1-214 protein coding urinary bladder (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 354.00 7.31 0.95 100.0 CTC1-214 protein coding urinary bladder (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 2433.00 1.54 6.56 75.28 ENST00000651540 lncRNA urinary bladder (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 7696.00 4.86 20.74 99.06 ENST00000651540 lncRNA urinary bladder (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 1745.00 1.10 4.70 100.0 ENST00000651540 lncRNA urinary bladder (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 9238.00 5.83 24.90 63.61 ENST00000651540 lncRNA urinary bladder (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 1239.00 0.78 3.34 100.0 ENST00000651540 lncRNA urinary bladder (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 578.00 0.36 1.56 100.0 ENST00000651540 lncRNA urinary bladder (Tissue)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 608.00 0.38 1.64 100.0 ENST00000651540 lncRNA urinary bladder (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 7947.00 5.01 21.42 100.0 ENST00000651540 lncRNA urinary bladder (Tissue)