ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 3889.00 77.61 10.48 100.0 SNORD70B-201 snoRNA urinary bladder (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 23797.00 77.74 64.13 94.48 RNY4P18-201 misc RNA urinary bladder (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 59688.00 94.25 160.86 100.0 SNORD90-201 snoRNA urinary bladder (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 1054.00 1.66 2.84 22.7 SNORD90-201 snoRNA urinary bladder (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 2109.00 1.33 5.68 100.0 SNORD69-201 snoRNA urinary bladder (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 144111.00 90.98 388.37 100.0 SNORD69-201 snoRNA urinary bladder (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 2977.00 1.88 8.02 100.0 SNORD69-201 snoRNA urinary bladder (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 2250.00 1.42 6.06 100.0 SNORD69-201 snoRNA urinary bladder (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 2962.00 55.91 7.98 69.81 SNORD70-201 snoRNA urinary bladder (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 114.00 3.13 0.31 100.0 B4GALNT2-202 protein coding urinary bladder (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 2213.00 60.73 5.96 70.16 B4GALNT2-202 protein coding urinary bladder (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 1562.00 89.62 4.21 100.0 NDE1-202 protein coding urinary bladder (Tissue)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 319.00 94.10 0.86 100.0 MIR208B-201 miRNA urinary bladder (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 14518.00 73.34 39.13 100.0 MIR450B-201 miRNA urinary bladder (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 1162.00 52.51 3.13 100.0 MIR887-201 miRNA urinary bladder (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 15101.00 90.40 40.70 100.0 MIR889-201 miRNA urinary bladder (Tissue)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 2742.00 77.90 7.39 100.0 SNORD111-201 snoRNA urinary bladder (Tissue)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 2339.00 66.96 6.30 85.09 SNORD88A-201 snoRNA urinary bladder (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 372.00 93.23 1.00 100.0 MIR548K-201 miRNA urinary bladder (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 899.00 67.54 2.42 100.0 MIR320B2-201 miRNA urinary bladder (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 1687.00 93.57 4.55 100.0 MIR1271-201 miRNA urinary bladder (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 74.00 0.08 0.20 100.0 SNORD100-201 snoRNA urinary bladder (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 89330.00 93.78 240.74 100.0 SNORD100-201 snoRNA urinary bladder (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 2305.00 2.42 6.21 100.0 SNORD100-201 snoRNA urinary bladder (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 326.00 0.34 0.88 100.0 SNORD100-201 snoRNA urinary bladder (Tissue)