ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 1403.00 0.57 3.78 91.94 MT-TE-201 Mt tRNA urinary bladder (Tissue)
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 205.00 0.08 0.55 100.0 MT-TE-201 Mt tRNA urinary bladder (Tissue)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 2168.00 0.89 5.84 100.0 MT-TE-201 Mt tRNA urinary bladder (Tissue)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 115.00 0.05 0.31 100.0 MT-TE-201 Mt tRNA urinary bladder (Tissue)
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 383.00 0.16 1.03 82.19 MT-TE-201 Mt tRNA urinary bladder (Tissue)
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 169.00 0.07 0.46 10.75 MT-TE-201 Mt tRNA urinary bladder (Tissue)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 203916.00 83.44 549.55 90.71 MT-TE-201 Mt tRNA urinary bladder (Tissue)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 1611.00 60.86 4.34 100.0 MIR196A1-201 miRNA urinary bladder (Tissue)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 1859.00 32.98 5.01 100.0 MT-RNR1-201 Mt rRNA urinary bladder (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 4720.00 82.24 12.72 100.0 MIR454-201 miRNA urinary bladder (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 2598.00 62.33 7.00 100.0 MIR501-201 miRNA urinary bladder (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 4250.00 92.77 11.45 100.0 MIR769-201 miRNA urinary bladder (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 30.00 63.83 0.08 100.0 KRTAP19-1-201 protein coding urinary bladder (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 896.00 44.98 2.41 100.0 MIR708-201 miRNA urinary bladder (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 58.00 87.88 0.16 100.0 MIR509-3-201 miRNA urinary bladder (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 320.00 54.33 0.86 100.0 MIR543-201 miRNA urinary bladder (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 206.00 95.37 0.56 100.0 MIR301B-201 miRNA urinary bladder (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 1488.00 49.72 4.01 75.88 RNU1-82P-201 snRNA urinary bladder (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 788.00 4.53 2.12 100.0 SNORD66-201 snoRNA urinary bladder (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 6310.00 36.25 17.01 100.0 SNORD66-201 snoRNA urinary bladder (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 18.00 0.10 0.05 100.0 SNORD66-201 snoRNA urinary bladder (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 4189.00 24.07 11.29 79.74 SNORD66-201 snoRNA urinary bladder (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 394.00 75.62 1.06 100.0 U3.17-201 snoRNA urinary bladder (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 6085.00 72.63 16.40 100.0 SNORD17-201 snoRNA urinary bladder (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 53.00 48.62 0.14 100.0 SNORD72-201 snoRNA urinary bladder (Tissue)