ENCFF001RMU

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 146.00 0.05 0.31 100.0 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1652.00 0.59 3.46 100.0 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 29.00 0.01 0.06 100.0 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 2.00 0.00 0.00 66.67 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 2071.00 0.74 4.34 99.38 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 1290.00 12.38 2.71 62.41 SNHG14-323 lncRNA metanephros (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 3351.00 0.30 7.03 52.75 MEG8-251 lncRNA metanephros (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 1074300.00 95.72 2253.04 99.48 MEG8-251 lncRNA metanephros (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 4334.00 0.39 9.09 60.08 MEG8-251 lncRNA metanephros (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 22485.00 2.00 47.16 93.34 MEG8-251 lncRNA metanephros (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 389.00 0.03 0.82 100.0 MEG8-251 lncRNA metanephros (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 28842.00 60.39 60.49 88.84 SNHG14-336 lncRNA metanephros (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 17365.00 36.36 36.42 54.94 SNHG14-336 lncRNA metanephros (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 11314.00 72.40 23.73 94.58 SNHG14-341 lncRNA metanephros (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 349.00 12.35 0.73 100.0 NCL-211 retained intron metanephros (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 23.00 0.71 0.05 100.0 LINC02739-203 lncRNA metanephros (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 186.00 5.78 0.39 71.81 LINC02739-203 lncRNA metanephros (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 377.00 11.71 0.79 100.0 LINC02739-203 lncRNA metanephros (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 1115.00 34.64 2.34 100.0 LINC02739-203 lncRNA metanephros (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 8.00 0.25 0.02 100.0 LINC02739-203 lncRNA metanephros (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 73.00 2.27 0.15 28.19 LINC02739-203 lncRNA metanephros (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 15.00 65.22 0.03 100.0 MIR124-1HG-216 lncRNA metanephros (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 255.00 15.46 0.53 100.0 SNHG10-212 lncRNA metanephros (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 23925.48 43.69 50.18 45.51 SNHG19-202 lncRNA metanephros (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 28741.18 52.49 60.28 66.55 SNHG19-202 lncRNA metanephros (Tissue)