ENCFF001RMU

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 4.66 0.01 0.01 93.24 SNHG19-202 lncRNA metanephros (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 3794.00 22.12 7.96 100.0 MIR222HG-206 lncRNA metanephros (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 8735.00 50.93 18.32 82.0 MIR222HG-206 lncRNA metanephros (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 288.00 1.68 0.60 100.0 MIR222HG-206 lncRNA metanephros (Tissue)
ENST00000688371.3 ENST00000688371.3_313_335_+ 313–335 1.00 5.56 0.00 100.0 MIR302CHG-205 lncRNA metanephros (Tissue)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 1.89 10.50 0.00 47.25 MIR302CHG-205 lncRNA metanephros (Tissue)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 1.52 8.44 0.00 38.0 MIR302CHG-205 lncRNA metanephros (Tissue)
ENST00000688371.3 ENST00000688371.3_493_514_+ 493–514 1.00 5.56 0.00 100.0 MIR302CHG-205 lncRNA metanephros (Tissue)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 3.00 16.67 0.01 100.0 MIR302CHG-205 lncRNA metanephros (Tissue)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 3.00 16.67 0.01 100.0 MIR302CHG-205 lncRNA metanephros (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 17.00 11.72 0.04 100.0 RPSA-216 retained intron metanephros (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1029.00 2.40 2.16 74.03 MIR99AHG-370 lncRNA metanephros (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 40425.00 94.15 84.78 98.44 MIR99AHG-370 lncRNA metanephros (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 148.00 75.51 0.31 100.0 HPS4-237 retained intron metanephros (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 1590.00 82.09 3.33 100.0 MEG8-253 lncRNA metanephros (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 560.00 13.65 1.17 100.0 MEG9-206 lncRNA metanephros (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 913.00 22.25 1.91 100.0 MEG9-206 lncRNA metanephros (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 933.00 22.74 1.96 100.0 MEG9-206 lncRNA metanephros (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 882.00 13.22 1.85 100.0 DNAJC5-203 nonsense mediated decay metanephros (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 586.00 46.77 1.23 100.0 ENST00000707189 TEC metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 235.00 0.07 0.49 100.0 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 139980.31 40.64 293.57 44.3 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 61.00 0.02 0.13 100.0 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 388.00 0.11 0.81 100.0 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 194670.91 56.51 408.27 59.88 MIR17HG-214 lncRNA metanephros (Tissue)