ENCFF001RMU

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 150.00 0.01 0.31 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 1785.00 0.07 3.74 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 40267.00 1.52 84.45 70.4 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 566.00 0.02 1.19 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 208832.00 7.90 437.97 97.46 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 647.00 0.02 1.36 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 327.00 0.01 0.69 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 1.00 0.00 0.00 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 94254.00 3.57 197.67 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1980.00 0.07 4.15 77.89 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 423.01 0.02 0.89 51.78 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 544.00 0.02 1.14 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1781.00 0.07 3.74 63.31 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 1025.00 0.04 2.15 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 541.00 0.02 1.13 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 547.00 0.02 1.15 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 83367.00 37.98 174.84 100.0 SNHG14-315 lncRNA metanephros (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 58236.00 26.53 122.13 91.79 SNHG14-315 lncRNA metanephros (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 55150.00 25.12 115.66 87.68 SNHG14-315 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 1277.00 0.46 2.68 100.0 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 91764.93 32.89 192.45 42.1 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 382.00 0.14 0.80 100.0 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 1025.00 0.37 2.15 100.0 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 143497.63 51.43 300.95 60.71 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 23026.00 8.25 48.29 89.48 SNHG5-273 lncRNA metanephros (Tissue)