ENCFF001RMU

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 143.00 20.69 0.30 100.0 SCARNA4-202 scaRNA metanephros (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 1566.00 78.65 3.28 100.0 ENST00000625572 miRNA metanephros (Tissue)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 14685.00 92.85 30.80 100.0 ENST00000628177 snoRNA metanephros (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 2674.00 90.89 5.61 100.0 ENST00000630615 snoRNA metanephros (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 16.00 16.00 0.03 100.0 DMRT2-209 protein coding metanephros (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 7.00 7.00 0.01 100.0 DMRT2-209 protein coding metanephros (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 890.00 17.26 1.87 100.0 SNORD98-201 snoRNA metanephros (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 2557.00 49.60 5.36 100.0 SNORD98-201 snoRNA metanephros (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 176826.49 55.63 370.84 59.13 MIR106AHG-201 lncRNA metanephros (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 1307.77 0.41 2.74 28.72 MIR106AHG-201 lncRNA metanephros (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 538.00 0.17 1.13 100.0 MIR106AHG-201 lncRNA metanephros (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 3063.77 0.96 6.43 67.29 MIR106AHG-201 lncRNA metanephros (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 26074.00 67.44 54.68 100.0 MEG8-222 lncRNA metanephros (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 6068.00 15.69 12.73 100.0 MEG8-222 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 18748.00 13.77 39.32 95.35 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 72703.00 53.39 152.47 92.25 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 14657.00 10.76 30.74 100.0 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 356.00 0.26 0.75 90.36 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 464.00 0.34 0.97 100.0 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 4395.00 3.23 9.22 59.75 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 3579.00 2.63 7.51 75.24 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 2703.00 1.98 5.67 62.24 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 690.02 21.56 1.45 70.63 5S_rRNA.20-201 rRNA pseudogene metanephros (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 758.00 9.87 1.59 100.0 HSPA9-211 retained intron metanephros (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 1040.00 13.54 2.18 29.38 HSPA9-211 retained intron metanephros (Tissue)