ENCFF001RMU

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 14733.00 91.29 30.90 100.0 RPS3A-206 retained intron metanephros (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 30239.00 97.89 63.42 100.0 COX7C-203 protein coding metanephros (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 59814.83 65.98 125.44 74.25 RACK1-229 protein coding metanephros (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 4142.00 4.57 8.69 89.81 RACK1-229 protein coding metanephros (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 24594.64 27.13 51.58 37.85 RACK1-229 protein coding metanephros (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 738.00 0.81 1.55 100.0 RACK1-229 protein coding metanephros (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 17155.00 19.49 35.98 63.5 RACK1-230 retained intron metanephros (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 69302.00 78.74 145.34 96.76 RACK1-230 retained intron metanephros (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 11.00 7.48 0.02 100.0 RNA5SP486-201 rRNA pseudogene metanephros (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1288.00 83.37 2.70 100.0 SCARNA5-201 scaRNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 1347.00 1.00 2.82 100.0 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 12355.00 9.15 25.91 100.0 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 445.00 0.33 0.93 100.0 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 6627.00 4.91 13.90 69.49 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 1992.00 1.48 4.18 100.0 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 449.00 0.33 0.94 100.0 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 69898.00 51.77 146.59 96.0 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 5706.00 4.23 11.97 96.16 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 106.00 0.08 0.22 100.0 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 1909.00 1.41 4.00 50.83 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 11980.00 8.87 25.12 91.69 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 113.00 0.08 0.24 35.65 RNY4-201 misc RNA metanephros (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 3651.00 81.84 7.66 87.41 MIR3142HG-201 lncRNA metanephros (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 7802.00 89.94 16.36 100.0 SNHG6-204 retained intron metanephros (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 39767.00 48.88 83.40 87.63 MIR151A-201 miRNA metanephros (Tissue)