ENCFF001RMU

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 39767.00 48.88 83.40 87.63 MIR151A-201 miRNA metanephros (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 1295.00 93.10 2.72 100.0 DENND3-221 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 339.00 0.32 0.71 100.0 WDR74-204 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 136.00 0.13 0.29 100.0 WDR74-204 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 150.00 0.14 0.31 74.63 WDR74-204 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 4.00 0.00 0.01 100.0 WDR74-204 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 49.00 0.05 0.10 64.47 WDR74-204 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 746.00 0.70 1.56 63.71 WDR74-204 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 27.00 0.03 0.06 35.53 WDR74-204 protein coding metanephros (Tissue)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 119.00 0.11 0.25 100.0 WDR74-204 protein coding metanephros (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 7888.00 83.74 16.54 100.0 HSPA8-211 retained intron metanephros (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 979.00 22.60 2.05 100.0 SCARNA9-201 lncRNA metanephros (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 149.00 0.34 0.31 100.0 TAF1D-215 retained intron metanephros (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 41508.00 94.96 87.05 100.0 TAF1D-215 retained intron metanephros (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 70.00 0.71 0.15 100.0 HSPA8-215 retained intron metanephros (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 229.00 2.32 0.48 100.0 HSPA8-215 retained intron metanephros (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 8090.00 81.91 16.97 100.0 HSPA8-215 retained intron metanephros (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 398.00 25.17 0.83 100.0 RPS2-215 retained intron metanephros (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 2978095.00 83.71 6245.72 84.49 ENST00000548801 lncRNA metanephros (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 491.00 9.74 1.03 100.0 ENST00000554988 lncRNA metanephros (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 1191.00 23.63 2.50 100.0 ENST00000554988 lncRNA metanephros (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 209.00 4.15 0.44 100.0 ENST00000554988 lncRNA metanephros (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 35389.00 51.17 74.22 100.0 SNHG14-220 retained intron metanephros (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 596.00 0.86 1.25 100.0 SNHG14-220 retained intron metanephros (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 672.00 0.97 1.41 100.0 SNHG14-220 retained intron metanephros (Tissue)