ENCFF001RMT

Library Details

Organism: Homo Sapiens
Biosample: thyroid gland (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGE
Description: Part of ENCODE experiment ENCSR000AGE. The libraries contained in this experiment come from human fetal thyroid gland tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 33736.00 51.75 44.50 65.41 ENST00000582320 lncRNA thyroid gland (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 4992.00 7.66 6.58 100.0 ENST00000582320 lncRNA thyroid gland (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 3216.00 4.93 4.24 100.0 ENST00000582320 lncRNA thyroid gland (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 2376.00 2.75 3.13 100.0 RPL17-214 retained intron thyroid gland (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 34370.62 39.80 45.34 48.42 RPL17-214 retained intron thyroid gland (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 44800.73 51.88 59.10 58.1 RPL17-214 retained intron thyroid gland (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 2719.00 0.20 3.59 100.0 SNORD43-201 snoRNA thyroid gland (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 1339669.00 98.37 1767.11 99.9 SNORD43-201 snoRNA thyroid gland (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 1995.00 0.15 2.63 100.0 SNORD43-201 snoRNA thyroid gland (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 1317.00 37.56 1.74 100.0 MIR151B-201 miRNA thyroid gland (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 177.00 0.96 0.23 100.0 SNORD3A-201 snoRNA thyroid gland (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 31760.00 84.26 41.89 100.0 SNORD92-201 snoRNA thyroid gland (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 13241.00 73.01 17.47 100.0 NSRP1-214 protein coding thyroid gland (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 2588.00 14.27 3.41 77.42 NSRP1-214 protein coding thyroid gland (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 283.00 0.21 0.37 100.0 MIR23AHG-201 lncRNA thyroid gland (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 24964.00 18.34 32.93 94.19 MIR23AHG-201 lncRNA thyroid gland (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 53608.00 39.39 70.71 92.67 MIR23AHG-201 lncRNA thyroid gland (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 22270.00 16.36 29.38 84.74 MIR23AHG-201 lncRNA thyroid gland (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 17014.00 12.50 22.44 72.77 MIR23AHG-201 lncRNA thyroid gland (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 1.00 1.75 0.00 100.0 MIR122HG-201 lncRNA thyroid gland (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 50.00 33.11 0.07 100.0 ODAD3-204 nonsense mediated decay thyroid gland (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1413.00 0.88 1.86 100.0 VMP1-217 retained intron thyroid gland (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 29.00 0.02 0.04 100.0 VMP1-217 retained intron thyroid gland (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 73438.00 45.70 96.87 52.51 VMP1-217 retained intron thyroid gland (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1107.00 0.05 1.46 100.0 C19orf48P-203 retained intron thyroid gland (Tissue)