ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 588.00 5.06 1.22 100.0 7SK.1-201 misc RNA diencephalon (Tissue)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 1799.00 60.53 3.73 100.0 SNORD14C-201 snoRNA diencephalon (Tissue)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 70250.00 50.08 145.66 100.0 SNORD115-44-201 snoRNA diencephalon (Tissue)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 60.00 7.94 0.12 100.0 RNA5SP77-201 rRNA pseudogene diencephalon (Tissue)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 52955.00 23.60 109.80 100.0 SNORD114-22-201 snoRNA diencephalon (Tissue)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 165956.00 73.95 344.11 99.51 SNORD114-22-201 snoRNA diencephalon (Tissue)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 905.00 5.36 1.88 100.0 SNORD6-201 snoRNA diencephalon (Tissue)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 14518.00 85.99 30.10 100.0 SNORD6-201 snoRNA diencephalon (Tissue)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 674.00 1.51 1.40 100.0 RNY3-201 misc RNA diencephalon (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 27567.00 52.08 57.16 98.15 SNORD82-201 snoRNA diencephalon (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 345.00 0.65 0.72 100.0 SNORD82-201 snoRNA diencephalon (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 4877.00 9.21 10.11 86.89 SNORD82-201 snoRNA diencephalon (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 7359.43 13.90 15.26 51.58 SNORD82-201 snoRNA diencephalon (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 7078.90 13.37 14.68 49.61 SNORD82-201 snoRNA diencephalon (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 656.00 1.24 1.36 100.0 SNORD82-201 snoRNA diencephalon (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 208.00 0.39 0.43 100.0 SNORD82-201 snoRNA diencephalon (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 15605.00 96.85 32.36 98.04 MIR146B-201 miRNA diencephalon (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 31.00 26.50 0.06 100.0 SNHG20-201 lncRNA diencephalon (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 71.00 4.56 0.15 100.0 ATP5MK-205 protein coding diencephalon (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 342.00 21.98 0.71 100.0 ATP5MK-205 protein coding diencephalon (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 25.00 12.76 0.05 100.0 LINC01556-201 lncRNA diencephalon (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 13.00 11.50 0.03 100.0 ATAD3A-202 protein coding diencephalon (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 4962.00 60.86 10.29 73.91 TMC5-202 protein coding diencephalon (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 30.00 43.48 0.06 100.0 ZMYM2-203 protein coding diencephalon (Tissue)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 894.00 6.53 1.85 100.0 RNVU1-7-201 snRNA diencephalon (Tissue)