ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 20.00 0.19 0.04 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 92.00 0.85 0.19 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 11.00 0.10 0.02 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 5101.00 5.17 10.58 93.87 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 64.00 0.06 0.13 62.14 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 25.00 0.03 0.05 56.82 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 783.00 17.46 1.62 46.39 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 681.00 96.05 1.41 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 75.00 6.69 0.16 92.59 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 197.00 82.43 0.41 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 293.00 3.46 0.61 84.2 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 55.00 0.65 0.11 15.8 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 3318.00 39.22 6.88 78.96 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 3208.21 28.67 6.65 39.83 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 186.00 1.66 0.39 71.81 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 5476.65 48.95 11.36 68.84 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 9117.00 88.01 18.90 95.55 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 59.00 4.23 0.12 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 570.00 20.44 1.18 78.4 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 350.00 0.12 0.73 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 307.00 0.22 0.64 50.91 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 275.00 58.02 0.57 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 574.00 30.63 1.19 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 317957.00 96.05 659.29 99.59 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 30.00 0.27 0.06 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA diencephalon (Tissue)