ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 186.00 6.73 0.39 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 30.00 0.09 0.06 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 13.00 0.04 0.03 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 277.00 0.83 0.57 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 290.00 0.86 0.60 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 27494.00 81.97 57.01 95.62 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 156.00 6.69 0.32 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 701.00 11.91 1.45 34.88 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 30.00 1.47 0.06 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 144.00 4.65 0.30 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 263.00 8.49 0.55 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 536.00 17.30 1.11 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 202.00 0.20 0.42 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 55.00 27.64 0.11 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 518.00 52.22 1.07 86.62 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_13_+ 1–13 23.00 2.32 0.05 100.0 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 80.00 8.06 0.17 13.38 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 1140.00 43.31 2.36 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 1.00 0.04 0.00 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 71.00 23.28 0.15 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 340.00 63.20 0.70 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 52.00 12.68 0.11 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 46.00 0.43 0.10 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 13.00 0.12 0.03 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 24.00 0.22 0.05 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA diencephalon (Tissue)