ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 8047.00 9.65 16.69 100.0 ZFAS1-242 lncRNA diencephalon (Tissue)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 72.00 45.00 0.15 100.0 ENST00000837997 lncRNA diencephalon (Tissue)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 22.00 13.75 0.05 100.0 ENST00000837997 lncRNA diencephalon (Tissue)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 7673.00 75.34 15.91 83.0 ENST00000839036 lncRNA diencephalon (Tissue)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 32.00 18.29 0.07 100.0 ENST00000849527 lncRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 2251.00 75.64 4.67 94.66 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 6.00 0.20 0.01 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 1934.00 0.58 4.01 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 1129.00 68.93 2.34 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 127.00 7.75 0.26 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 60.00 12.47 0.12 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 154.00 12.85 0.32 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 1345.00 56.70 2.79 86.61 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 436.00 0.13 0.90 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-159141611 tRNA-transcript-chr1-159141611_3_20_+ 3–20 643.00 35.66 1.33 100.0 TRNA-TRANSCRIPT-CHR1-159141611 Arg tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 314.00 7.00 0.65 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 675.00 15.05 1.40 97.26 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 1.00 0.02 0.00 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 1011.00 46.23 2.10 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 956.00 0.69 1.98 89.93 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 27.00 0.02 0.06 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 185.00 0.13 0.38 83.71 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 26861.00 19.29 55.70 52.89 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_72_+ 1–72 1039.00 0.75 2.15 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA diencephalon (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 7.00 0.01 0.01 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA diencephalon (Tissue)