ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 79797.37 34.22 165.46 42.26 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 392.00 0.17 0.81 100.0 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 616.00 0.26 1.28 100.0 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 123262.75 52.85 255.59 60.8 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 7516.00 3.22 15.58 88.03 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 235.00 0.10 0.49 100.0 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 3159.00 1.35 6.55 100.0 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 34.00 0.01 0.07 100.0 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 1.00 0.00 0.00 100.0 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 3193.00 1.37 6.62 99.72 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 4579.00 1.85 9.49 76.88 SNHG14-323 lncRNA diencephalon (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 2954.00 0.24 6.13 50.1 MEG8-251 lncRNA diencephalon (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 1173364.00 95.15 2432.98 99.57 MEG8-251 lncRNA diencephalon (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 4113.00 0.33 8.53 63.73 MEG8-251 lncRNA diencephalon (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 30034.00 2.44 62.28 95.27 MEG8-251 lncRNA diencephalon (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 1614.00 0.13 3.35 100.0 MEG8-251 lncRNA diencephalon (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 133501.00 74.17 276.82 91.33 SNHG14-336 lncRNA diencephalon (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 39167.00 21.76 81.21 44.74 SNHG14-336 lncRNA diencephalon (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 54291.00 73.20 112.57 96.28 SNHG14-341 lncRNA diencephalon (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 275.00 14.31 0.57 100.0 NCL-211 retained intron diencephalon (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 1396.00 6.15 2.89 100.0 FMN2-209 protein coding CDS not defined diencephalon (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 20.00 0.38 0.04 100.0 LINC02739-203 lncRNA diencephalon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 102.00 1.93 0.21 80.31 LINC02739-203 lncRNA diencephalon (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 601.00 11.39 1.25 100.0 LINC02739-203 lncRNA diencephalon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 155.00 2.94 0.32 100.0 LINC02739-203 lncRNA diencephalon (Tissue)