ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 1583.00 0.05 3.28 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 2038.00 0.07 4.23 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 184.00 0.01 0.38 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 425.00 0.01 0.88 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 10600.00 0.35 21.98 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 220.00 0.01 0.46 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 1864.00 0.06 3.87 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 61607.00 2.04 127.74 74.54 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 1378.00 0.05 2.86 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 324405.00 10.75 672.66 98.18 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 1779.00 0.06 3.69 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 1236.00 0.04 2.56 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 4.00 0.00 0.01 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 116655.00 3.87 241.89 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 2441.00 0.08 5.06 77.15 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 473.28 0.02 0.98 49.87 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 35.00 0.00 0.07 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 2886.00 0.10 5.98 62.18 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 891.00 0.03 1.85 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 1003.00 0.03 2.08 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 369.00 0.01 0.77 100.0 SNHG1-248 lncRNA diencephalon (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 432148.00 38.59 896.06 100.0 SNHG14-315 lncRNA diencephalon (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 324975.00 29.02 673.84 94.28 SNHG14-315 lncRNA diencephalon (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 247309.00 22.09 512.80 86.62 SNHG14-315 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 2666.00 1.14 5.53 100.0 SNHG5-273 lncRNA diencephalon (Tissue)