ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 1939.00 1.99 4.02 100.0 NOP56-219 retained intron diencephalon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 437.00 0.45 0.91 100.0 NOP56-219 retained intron diencephalon (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 50481.00 51.72 104.67 80.96 NOP56-219 retained intron diencephalon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 3001.00 19.50 6.22 45.08 RNA5-8SN2-201 rRNA diencephalon (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 95.22 0.62 0.20 55.68 RNA5-8SN2-201 rRNA diencephalon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 8.00 0.05 0.02 100.0 RNA5-8SN2-201 rRNA diencephalon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 361.00 2.35 0.75 100.0 RNA5-8SN2-201 rRNA diencephalon (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 212.00 1.38 0.44 100.0 RNA5-8SN2-201 rRNA diencephalon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 4666.00 30.33 9.67 60.86 RNA5-8SN2-201 rRNA diencephalon (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 99.63 0.65 0.21 58.27 RNA5-8SN2-201 rRNA diencephalon (Tissue)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 1.00 100.00 0.00 100.0 MIR7974-201 miRNA diencephalon (Tissue)
ENST00000616574.2 ENST00000616574.2_44_64_+ 44–64 150.00 33.48 0.31 100.0 MIR376A1-201 miRNA diencephalon (Tissue)
ENST00000616574.2 ENST00000616574.2_7_27_+ 7–27 84.00 18.75 0.17 100.0 MIR376A1-201 miRNA diencephalon (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 1033.00 0.28 2.14 100.0 U2.3-201 snRNA diencephalon (Tissue)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 1143.80 0.32 2.37 36.21 U2.3-201 snRNA diencephalon (Tissue)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 288560.00 79.53 598.33 99.59 U2.3-201 snRNA diencephalon (Tissue)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 3.00 0.00 0.01 100.0 U2.3-201 snRNA diencephalon (Tissue)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 18821.00 5.19 39.03 73.32 U2.3-201 snRNA diencephalon (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 9239.00 2.55 19.16 64.77 U2.3-201 snRNA diencephalon (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 2810.00 0.77 5.83 87.62 U2.3-201 snRNA diencephalon (Tissue)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 2052.99 0.57 4.26 64.99 U2.3-201 snRNA diencephalon (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 330.00 0.09 0.68 100.0 U2.3-201 snRNA diencephalon (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 6.00 0.00 0.01 100.0 U2.3-201 snRNA diencephalon (Tissue)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 169.00 0.05 0.35 100.0 U2.3-201 snRNA diencephalon (Tissue)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 129.00 0.04 0.27 100.0 U2.3-201 snRNA diencephalon (Tissue)