ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 639462.89 72.29 1325.93 79.22 C19orf48P-203 retained intron diencephalon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 236996.92 26.79 491.42 27.33 C19orf48P-203 retained intron diencephalon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 6885.00 0.78 14.28 91.13 C19orf48P-203 retained intron diencephalon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 104.00 0.01 0.22 100.0 C19orf48P-203 retained intron diencephalon (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 6.00 0.00 0.01 100.0 C19orf48P-203 retained intron diencephalon (Tissue)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 14.00 66.67 0.03 100.0 ENST00000597420 lncRNA diencephalon (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 388.00 6.91 0.80 100.0 RPS11-206 retained intron diencephalon (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 4538.00 80.79 9.41 100.0 RPS11-206 retained intron diencephalon (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 23842.00 71.61 49.44 73.41 CARMN-209 lncRNA diencephalon (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 2997.00 40.96 6.21 100.0 ENST00000602478 lncRNA diencephalon (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 10.00 7.69 0.02 100.0 PPFIA1P1-201 processed pseudogene diencephalon (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 2934.00 32.81 6.08 100.0 SNORD114-21-201 snoRNA diencephalon (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 3677.00 41.12 7.62 100.0 SNORD114-21-201 snoRNA diencephalon (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 69684.00 42.39 144.49 100.0 SNORD115-40-201 snoRNA diencephalon (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 23785.00 98.27 49.32 100.0 MIR98-201 miRNA diencephalon (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 77472.00 97.48 160.64 100.0 SNORD113-5-201 snoRNA diencephalon (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 2931.00 92.20 6.08 100.0 MIR15A-201 miRNA diencephalon (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 499.00 81.94 1.03 100.0 MIR376C-201 miRNA diencephalon (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 1590.00 55.69 3.30 100.0 SNHG21-206 retained intron diencephalon (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 51.00 13.32 0.11 100.0 SNORD11B-201 snoRNA diencephalon (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 1970.00 72.69 4.08 100.0 SNORD91B-201 snoRNA diencephalon (Tissue)
ENST00000608502.2 ENST00000608502.2_858_879_+ 858–879 562.00 66.20 1.17 100.0 MIR219A2HG-201 lncRNA diencephalon (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 6466.00 52.26 13.41 63.92 SNORD91A-201 snoRNA diencephalon (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 17970.00 46.75 37.26 96.85 MIR486-1-201 miRNA diencephalon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 19165.00 19.64 39.74 71.26 NOP56-219 retained intron diencephalon (Tissue)