ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 2975.00 45.01 6.17 70.05 ENST00000582320 lncRNA diencephalon (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 1603.00 24.25 3.32 100.0 ENST00000582320 lncRNA diencephalon (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 587.00 8.88 1.22 100.0 ENST00000582320 lncRNA diencephalon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 4335.00 6.27 8.99 100.0 RPL17-214 retained intron diencephalon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 34019.19 49.21 70.54 60.04 RPL17-214 retained intron diencephalon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 27435.66 39.69 56.89 45.07 RPL17-214 retained intron diencephalon (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 81.00 0.06 0.17 100.0 SNORD43-201 snoRNA diencephalon (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 128616.00 98.75 266.69 99.98 SNORD43-201 snoRNA diencephalon (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 125.00 0.10 0.26 100.0 SNORD43-201 snoRNA diencephalon (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 931.00 52.78 1.93 100.0 MIR151B-201 miRNA diencephalon (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 507.00 3.20 1.05 100.0 SNORD3A-201 snoRNA diencephalon (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 13299.00 89.92 27.58 100.0 SNORD92-201 snoRNA diencephalon (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 14522.00 58.30 30.11 100.0 NSRP1-214 protein coding diencephalon (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 7744.00 31.09 16.06 85.15 NSRP1-214 protein coding diencephalon (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 58.00 1.03 0.12 100.0 MIR23AHG-201 lncRNA diencephalon (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1143.00 20.29 2.37 91.66 MIR23AHG-201 lncRNA diencephalon (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1190.00 21.12 2.47 79.39 MIR23AHG-201 lncRNA diencephalon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1676.00 29.75 3.48 86.57 MIR23AHG-201 lncRNA diencephalon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 608.00 10.79 1.26 52.82 MIR23AHG-201 lncRNA diencephalon (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 2.00 20.00 0.00 100.0 MIR122HG-201 lncRNA diencephalon (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 13.00 20.00 0.03 100.0 ODAD3-204 nonsense mediated decay diencephalon (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 31.00 0.20 0.06 100.0 VMP1-217 retained intron diencephalon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 2.00 0.01 0.00 100.0 VMP1-217 retained intron diencephalon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 9452.00 61.30 19.60 64.52 VMP1-217 retained intron diencephalon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 527.00 0.06 1.09 100.0 C19orf48P-203 retained intron diencephalon (Tissue)