ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 125.00 0.86 0.26 100.0 POLG-DT-202 lncRNA diencephalon (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 1260.00 42.89 2.61 100.0 ENST00000570843 lncRNA diencephalon (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 3620.00 76.13 7.51 100.0 MIR497HG-207 lncRNA diencephalon (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 219938.00 98.99 456.04 99.45 MIR22HG-212 lncRNA diencephalon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 581.00 0.48 1.20 58.92 SNORD53B-201 snoRNA diencephalon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 117397.00 96.08 243.42 97.91 SNORD53B-201 snoRNA diencephalon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 405.00 0.33 0.84 41.08 SNORD53B-201 snoRNA diencephalon (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 986.00 81.69 2.04 100.0 ENST00000578036 lncRNA diencephalon (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 2361.00 86.71 4.90 100.0 RPL23A-207 protein coding diencephalon (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 2875.00 91.18 5.96 100.0 MIR744-201 miRNA diencephalon (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 61.00 62.24 0.13 100.0 MIR378C-201 miRNA diencephalon (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 2161.00 71.94 4.48 75.64 MIR142HG-201 lncRNA diencephalon (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 1.00 0.03 0.00 100.0 MIR142HG-201 lncRNA diencephalon (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 15.00 0.50 0.03 1.52 MIR142HG-201 lncRNA diencephalon (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 1538.00 10.69 3.19 100.0 SNORD3C-201 snoRNA diencephalon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 221.98 0.11 0.46 72.78 RPL23A-208 retained intron diencephalon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 68.93 0.04 0.14 40.31 RPL23A-208 retained intron diencephalon (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 155485.00 79.41 322.40 89.91 RPL23A-208 retained intron diencephalon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 38207.00 19.51 79.22 92.22 RPL23A-208 retained intron diencephalon (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 4.00 2.03 0.01 100.0 MIR133A1HG-202 lncRNA diencephalon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 16340.00 12.50 33.88 62.57 RPL17-211 retained intron diencephalon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 25127.00 19.22 52.10 80.06 RPL17-211 retained intron diencephalon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 565.00 0.43 1.17 100.0 RPL17-211 retained intron diencephalon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 37848.00 28.96 78.48 92.52 RPL17-211 retained intron diencephalon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 46325.00 35.44 96.06 94.54 RPL17-211 retained intron diencephalon (Tissue)