ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 65.00 0.69 0.13 100.0 ENST00000554988 lncRNA diencephalon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 1125.00 11.94 2.33 100.0 ENST00000554988 lncRNA diencephalon (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 1403.00 0.51 2.91 100.0 SNHG14-220 retained intron diencephalon (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 1939.00 0.70 4.02 100.0 SNHG14-220 retained intron diencephalon (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 106712.00 38.47 221.27 100.0 SNHG14-220 retained intron diencephalon (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 156875.00 56.56 325.28 100.0 SNHG14-220 retained intron diencephalon (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 738.00 98.40 1.53 100.0 TEKT4P2-201 transcribed unprocessed pseudogene diencephalon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 34.00 0.01 0.07 100.0 RPL4-202 retained intron diencephalon (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 851.00 0.27 1.76 100.0 RPL4-202 retained intron diencephalon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 182.00 0.06 0.38 100.0 RPL4-202 retained intron diencephalon (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 393.00 0.12 0.81 100.0 RPL4-202 retained intron diencephalon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 309196.00 96.73 641.12 99.29 RPL4-202 retained intron diencephalon (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 7.00 0.05 0.01 100.0 ENST00000563103 lncRNA diencephalon (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 3427.00 66.47 7.11 100.0 RPL4-207 retained intron diencephalon (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 83.00 1.61 0.17 100.0 RPL4-207 retained intron diencephalon (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 2515.00 60.90 5.21 93.46 ENST00000565336 lncRNA diencephalon (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 628.00 15.21 1.30 87.1 ENST00000565336 lncRNA diencephalon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 325906.00 78.58 675.77 81.67 RBMX-210 retained intron diencephalon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 2246.00 0.54 4.66 100.0 RBMX-210 retained intron diencephalon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 721.00 0.17 1.50 100.0 RBMX-210 retained intron diencephalon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 2858.00 0.69 5.93 100.0 RBMX-210 retained intron diencephalon (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 6050.00 69.02 12.54 100.0 RPL4-214 retained intron diencephalon (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 182.00 2.08 0.38 100.0 RPL4-214 retained intron diencephalon (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 5471.14 37.76 11.34 58.87 POLG-DT-202 lncRNA diencephalon (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 4414.24 30.46 9.15 46.75 POLG-DT-202 lncRNA diencephalon (Tissue)