ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 60915.00 8.33 126.31 94.5 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 17578.00 2.40 36.45 100.0 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 2408.00 83.12 4.99 88.04 MIR3142HG-201 lncRNA diencephalon (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 6914.00 86.50 14.34 100.0 SNHG6-204 retained intron diencephalon (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 47296.00 41.23 98.07 100.0 MIR151A-201 miRNA diencephalon (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 54611.00 47.60 113.24 85.02 MIR151A-201 miRNA diencephalon (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 1496.00 78.00 3.10 100.0 DENND3-221 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 22.00 0.01 0.05 100.0 WDR74-204 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 26.00 0.01 0.05 68.42 WDR74-204 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 2194.00 0.60 4.55 69.56 WDR74-204 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 12.00 0.00 0.02 31.58 WDR74-204 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 68.00 0.02 0.14 56.67 WDR74-204 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 452.00 0.12 0.94 100.0 WDR74-204 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 1042.00 0.28 2.16 100.0 WDR74-204 protein coding diencephalon (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 350.00 0.10 0.73 100.0 WDR74-204 protein coding diencephalon (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 14542.00 84.18 30.15 100.0 HSPA8-211 retained intron diencephalon (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 1504.00 19.50 3.12 100.0 SCARNA9-201 lncRNA diencephalon (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 25523.00 91.32 52.92 100.0 TAF1D-215 retained intron diencephalon (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 316.00 1.13 0.66 100.0 TAF1D-215 retained intron diencephalon (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 512.00 5.81 1.06 100.0 HSPA8-215 retained intron diencephalon (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 6313.00 71.58 13.09 100.0 HSPA8-215 retained intron diencephalon (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 65.00 0.74 0.13 100.0 HSPA8-215 retained intron diencephalon (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 719.00 29.86 1.49 100.0 RPS2-215 retained intron diencephalon (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 3116.00 87.80 6.46 89.41 ENST00000548801 lncRNA diencephalon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 65.00 0.69 0.13 100.0 ENST00000554988 lncRNA diencephalon (Tissue)