ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 1941.00 0.68 4.02 62.47 MT-TE-201 Mt tRNA diencephalon (Tissue)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 1142.00 0.40 2.37 100.0 MT-TE-201 Mt tRNA diencephalon (Tissue)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 231013.00 80.75 479.01 92.48 MT-TE-201 Mt tRNA diencephalon (Tissue)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 1166.00 0.41 2.42 43.8 MT-TE-201 Mt tRNA diencephalon (Tissue)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 1350.00 0.47 2.80 100.0 MT-TE-201 Mt tRNA diencephalon (Tissue)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 4.00 100.00 0.01 100.0 MIR196A1-201 miRNA diencephalon (Tissue)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 118.00 0.50 0.24 100.0 MT-RNR1-201 Mt rRNA diencephalon (Tissue)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 2787.00 11.81 5.78 100.0 MT-RNR1-201 Mt rRNA diencephalon (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 4245.00 76.62 8.80 100.0 MIR454-201 miRNA diencephalon (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 1764.00 63.38 3.66 100.0 MIR501-201 miRNA diencephalon (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 25453.00 94.83 52.78 100.0 MIR769-201 miRNA diencephalon (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 42.00 68.85 0.09 100.0 KRTAP19-1-201 protein coding diencephalon (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 721.00 20.97 1.50 100.0 MIR708-201 miRNA diencephalon (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 80.00 86.96 0.17 100.0 MIR509-3-201 miRNA diencephalon (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 312.00 49.45 0.65 100.0 MIR543-201 miRNA diencephalon (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 288.00 95.36 0.60 100.0 MIR301B-201 miRNA diencephalon (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 5813.00 62.34 12.05 86.67 RNU1-82P-201 snRNA diencephalon (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 453.00 4.12 0.94 100.0 SNORD66-201 snoRNA diencephalon (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 2811.00 25.54 5.83 100.0 SNORD66-201 snoRNA diencephalon (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 18.00 0.16 0.04 100.0 SNORD66-201 snoRNA diencephalon (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 3620.00 32.89 7.51 77.38 SNORD66-201 snoRNA diencephalon (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 907.00 78.73 1.88 100.0 U3.17-201 snoRNA diencephalon (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 1316.00 53.28 2.73 100.0 SNORD17-201 snoRNA diencephalon (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 20.00 41.67 0.04 100.0 SNORD72-201 snoRNA diencephalon (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 2187.00 70.64 4.53 100.0 SNORD70B-201 snoRNA diencephalon (Tissue)