ENCFF001RMP

Library Details

Organism: Homo Sapiens
Biosample: frontal cortex (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFS
Description: Part of ENCODE experiment ENCSR000AFS. The libraries contained in this experiment come from human fetal frontal cortex tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 658.00 0.39 1.05 58.33 SNORD53B-201 snoRNA frontal cortex (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 161568.00 95.31 257.84 96.86 SNORD53B-201 snoRNA frontal cortex (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 470.00 0.28 0.75 41.67 SNORD53B-201 snoRNA frontal cortex (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 338.00 83.66 0.54 100.0 ENST00000578036 lncRNA frontal cortex (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 3205.00 86.83 5.11 100.0 RPL23A-207 protein coding frontal cortex (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 2510.00 90.26 4.01 100.0 MIR744-201 miRNA frontal cortex (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 27.00 52.94 0.04 100.0 MIR378C-201 miRNA frontal cortex (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 1031.00 74.23 1.65 80.36 MIR142HG-201 lncRNA frontal cortex (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 1.00 0.07 0.00 100.0 MIR142HG-201 lncRNA frontal cortex (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 22.00 1.58 0.04 5.18 MIR142HG-201 lncRNA frontal cortex (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 605.00 2.79 0.97 100.0 SNORD3C-201 snoRNA frontal cortex (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 228.63 0.10 0.36 68.86 RPL23A-208 retained intron frontal cortex (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 86.92 0.04 0.14 45.99 RPL23A-208 retained intron frontal cortex (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 177840.00 81.53 283.80 91.55 RPL23A-208 retained intron frontal cortex (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 38043.00 17.44 60.71 93.01 RPL23A-208 retained intron frontal cortex (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 2.00 1.55 0.00 100.0 MIR133A1HG-202 lncRNA frontal cortex (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 15201.00 8.94 24.26 53.76 RPL17-211 retained intron frontal cortex (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 33497.00 19.71 53.46 73.59 RPL17-211 retained intron frontal cortex (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 410.00 0.24 0.65 100.0 RPL17-211 retained intron frontal cortex (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 57601.00 33.89 91.92 92.03 RPL17-211 retained intron frontal cortex (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 58360.00 34.34 93.13 94.9 RPL17-211 retained intron frontal cortex (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 1609.00 45.39 2.57 67.95 ENST00000582320 lncRNA frontal cortex (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 709.00 20.00 1.13 100.0 ENST00000582320 lncRNA frontal cortex (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 349.00 9.84 0.56 100.0 ENST00000582320 lncRNA frontal cortex (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 4152.00 6.20 6.63 100.0 RPL17-214 retained intron frontal cortex (Tissue)