ENCFF001RMP

Library Details

Organism: Homo Sapiens
Biosample: frontal cortex (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFS
Description: Part of ENCODE experiment ENCSR000AFS. The libraries contained in this experiment come from human fetal frontal cortex tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 28144.72 42.06 44.91 52.82 RPL17-214 retained intron frontal cortex (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 29835.25 44.58 47.61 50.68 RPL17-214 retained intron frontal cortex (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 109.00 0.05 0.17 100.0 SNORD43-201 snoRNA frontal cortex (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 209046.00 98.86 333.60 99.98 SNORD43-201 snoRNA frontal cortex (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 241.00 0.11 0.38 100.0 SNORD43-201 snoRNA frontal cortex (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 672.00 43.44 1.07 100.0 MIR151B-201 miRNA frontal cortex (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 498.00 2.14 0.79 100.0 SNORD3A-201 snoRNA frontal cortex (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 30796.00 92.83 49.15 100.0 SNORD92-201 snoRNA frontal cortex (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 11640.00 58.35 18.58 100.0 NSRP1-214 protein coding frontal cortex (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 5663.00 28.39 9.04 79.41 NSRP1-214 protein coding frontal cortex (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 53.00 1.33 0.08 100.0 MIR23AHG-201 lncRNA frontal cortex (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 861.00 21.61 1.37 92.78 MIR23AHG-201 lncRNA frontal cortex (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 884.00 22.18 1.41 86.24 MIR23AHG-201 lncRNA frontal cortex (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1183.00 29.69 1.89 89.49 MIR23AHG-201 lncRNA frontal cortex (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 332.00 8.33 0.53 48.61 MIR23AHG-201 lncRNA frontal cortex (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 22.00 40.00 0.04 100.0 ODAD3-204 nonsense mediated decay frontal cortex (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 53.00 0.27 0.08 100.0 VMP1-217 retained intron frontal cortex (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 2.00 0.01 0.00 100.0 VMP1-217 retained intron frontal cortex (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 11540.00 59.04 18.42 62.12 VMP1-217 retained intron frontal cortex (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 384.00 0.04 0.61 100.0 C19orf48P-203 retained intron frontal cortex (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 764376.61 78.49 1219.82 84.55 C19orf48P-203 retained intron frontal cortex (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 200755.46 20.61 320.37 20.96 C19orf48P-203 retained intron frontal cortex (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 6316.00 0.65 10.08 91.48 C19orf48P-203 retained intron frontal cortex (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 61.00 0.01 0.10 100.0 C19orf48P-203 retained intron frontal cortex (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 9.00 0.00 0.01 100.0 C19orf48P-203 retained intron frontal cortex (Tissue)