ENCFF001RMP

Library Details

Organism: Homo Sapiens
Biosample: frontal cortex (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFS
Description: Part of ENCODE experiment ENCSR000AFS. The libraries contained in this experiment come from human fetal frontal cortex tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 74.00 0.03 0.12 38.95 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 9.00 0.00 0.01 100.0 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 8981.00 3.53 14.33 80.25 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 163.00 0.06 0.26 100.0 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 96.00 0.04 0.15 100.0 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 2147.00 0.84 3.43 100.0 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 221484.00 87.01 353.45 98.63 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 820.00 9.99 1.31 100.0 RPL7A-207 protein coding CDS not defined frontal cortex (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 3774.00 45.97 6.02 86.88 RPL7A-207 protein coding CDS not defined frontal cortex (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 493.00 6.00 0.79 100.0 RPL7A-207 protein coding CDS not defined frontal cortex (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 646.00 3.86 1.03 62.72 RN7SL2-201 misc RNA frontal cortex (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 1077.00 6.44 1.72 100.0 RN7SL2-201 misc RNA frontal cortex (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 7556.00 10.14 12.06 94.6 NOP56-217 protein coding CDS not defined frontal cortex (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 53108.00 71.29 84.75 84.24 NOP56-217 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 256.00 0.53 0.41 39.14 RABGGTB-213 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 21338.00 44.17 34.05 89.76 RABGGTB-213 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 19476.00 40.31 31.08 97.42 RABGGTB-213 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 398.00 0.82 0.64 60.86 RABGGTB-213 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 939.00 1.94 1.50 100.0 RABGGTB-213 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 46.00 0.10 0.07 100.0 RABGGTB-213 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 396.00 0.82 0.63 100.0 RABGGTB-213 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 5432.00 12.60 8.67 100.0 GNL3-211 retained intron frontal cortex (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 34005.00 78.87 54.27 100.0 GNL3-211 retained intron frontal cortex (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 787.00 8.55 1.26 100.0 RPL5-205 retained intron frontal cortex (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 7043.00 76.52 11.24 100.0 RPL5-205 retained intron frontal cortex (Tissue)