ENCFF000JFM

Library Details

Organism: Homo Sapiens
Biosample: thoracic aorta endothelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVA
Description: Part of ENCODE experiment ENCSR000CVA. The libraries contained in this experiment come from aortic adventital endothelial primary whole cells, HAoEC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 3195.00 1.16 287.24 100.0 GAS5-230 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 105704.00 38.50 9502.99 71.85 GAS5-230 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 1121.00 68.86 100.78 100.0 ENST00000651540 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 20568.00 6.50 1849.10 99.6 SNHG29-232 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 277989.00 87.87 24991.74 96.36 SNHG29-232 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 1222.00 0.39 109.86 100.0 SNHG29-232 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 1.00 0.00 0.09 100.0 SNHG29-232 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 621.00 0.20 55.83 100.0 SNHG29-232 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 2347.00 13.38 211.00 100.0 SNHG1-248 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 3993.00 22.76 358.98 100.0 SNHG1-248 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 6350.00 36.20 570.88 100.0 SNHG1-248 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1260.00 4.10 113.28 100.0 SNHG5-273 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 15699.00 51.09 1411.37 88.83 SNHG5-273 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 7619.00 24.79 684.96 86.0 SNHG5-273 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 3.00 0.01 0.27 100.0 SNHG5-273 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 517.00 80.16 46.48 100.0 SNHG14-336 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 1206.00 24.89 108.42 100.0 NCL-216 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 4080.04 51.42 366.80 71.07 SNHG19-202 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1553.34 19.58 139.65 33.48 SNHG19-202 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 544.00 40.51 48.91 100.0 SNHG8-214 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 5468.00 90.25 491.58 100.0 ENST00000722183 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 1854.00 77.28 166.68 100.0 ENST00000747512 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 8451.00 86.26 759.76 100.0 ENST00000772672 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 13.00 3.22 1.17 59.09 ENST00000788343 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 1.00 0.03 0.09 100.0 ENST00000823279 lncRNA thoracic aorta endothelial cell (Primary cell)