ENCFF000JFM

Library Details

Organism: Homo Sapiens
Biosample: thoracic aorta endothelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVA
Description: Part of ENCODE experiment ENCSR000CVA. The libraries contained in this experiment come from aortic adventital endothelial primary whole cells, HAoEC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 153.00 15.61 13.75 76.5 RNU5A-1-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 215.76 22.02 19.40 51.87 RNU5A-1-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 275.59 28.12 24.78 53.0 RNU5A-1-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 12.00 1.22 1.08 100.0 RNU5A-1-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 3.00 0.44 0.27 100.0 7SK.1-201 misc RNA thoracic aorta endothelial cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 229.00 33.28 20.59 100.0 7SK.1-201 misc RNA thoracic aorta endothelial cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 7.00 0.61 0.63 100.0 SNORD83A-201 snoRNA thoracic aorta endothelial cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 8.00 0.70 0.72 100.0 SNORD83A-201 snoRNA thoracic aorta endothelial cell (Primary cell)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 3.00 0.02 0.27 100.0 MT-RNR1-201 Mt rRNA thoracic aorta endothelial cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 1428.00 34.16 128.38 100.0 SNORD12B-201 snoRNA thoracic aorta endothelial cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 2044.00 48.90 183.76 100.0 SNORD12B-201 snoRNA thoracic aorta endothelial cell (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 13563.00 86.13 1219.34 100.0 SNHG3-202 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 3403.00 71.99 305.94 100.0 SNORD124-201 snoRNA thoracic aorta endothelial cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 6918.00 76.56 621.94 88.5 RPL3-212 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 1.00 0.56 0.09 100.0 RABGGTB-208 protein coding CDS not defined thoracic aorta endothelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 1175.00 3.97 105.63 100.0 RPL13A-212 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 24819.00 83.90 2231.28 100.0 RPL13A-212 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 5387.00 37.05 484.30 100.0 RPL7A-207 protein coding CDS not defined thoracic aorta endothelial cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 7416.00 51.00 666.71 100.0 RPL7A-207 protein coding CDS not defined thoracic aorta endothelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 2619.00 48.16 235.45 100.0 RABGGTB-213 protein coding CDS not defined thoracic aorta endothelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 755.00 13.88 67.88 100.0 RABGGTB-213 protein coding CDS not defined thoracic aorta endothelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 5.00 0.09 0.45 100.0 RABGGTB-213 protein coding CDS not defined thoracic aorta endothelial cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 19.00 0.01 1.71 100.0 RPL5-205 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 218540.00 98.75 19647.16 99.63 RPL5-205 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 154.00 6.19 13.84 100.0 RACK1-230 retained intron thoracic aorta endothelial cell (Primary cell)