ENCFF000JFM

Library Details

Organism: Homo Sapiens
Biosample: thoracic aorta endothelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVA
Description: Part of ENCODE experiment ENCSR000CVA. The libraries contained in this experiment come from aortic adventital endothelial primary whole cells, HAoEC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 2267.00 12.42 203.81 100.0 SNHG6-204 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 14452.00 79.15 1299.26 100.0 SNHG6-204 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 10.00 0.51 0.90 100.0 WDR74-204 protein coding thoracic aorta endothelial cell (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 2152.00 51.17 193.47 64.14 HSPA8-211 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 2566.00 86.17 230.69 100.0 RPS13-208 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 1690.00 88.62 151.93 100.0 HSPA8-215 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 536.00 55.37 48.19 100.0 RPL4-214 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 500.00 12.50 44.95 100.0 ENST00000570843 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 2552.00 63.82 229.43 100.0 ENST00000570843 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 7.00 0.62 0.63 100.0 SNORD3C-201 snoRNA thoracic aorta endothelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 3.81 0.15 0.34 76.12 C19orf48P-203 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 10.38 0.42 0.93 86.48 C19orf48P-203 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 1043.00 42.11 93.77 100.0 C19orf48P-203 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 82.00 16.14 7.37 100.0 RPS11-206 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 3811.00 61.96 342.62 100.0 NOP56-219 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 62.42 0.54 5.61 51.16 U2.3-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 3.00 0.03 0.27 100.0 U2.3-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 3868.00 33.67 347.74 100.0 U2.3-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 54.00 0.47 4.85 63.53 U2.3-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 71.29 0.62 6.41 58.43 U2.3-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 31.29 0.27 2.81 61.36 U2.3-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 10.87 0.09 0.98 36.23 U2.3-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 7.00 2.52 0.63 100.0 SNHG14-224 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 1088.00 0.40 97.81 100.0 GAS5-230 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 67647.00 24.64 6081.59 94.52 GAS5-230 retained intron thoracic aorta endothelial cell (Primary cell)