ENCFF001RMJ

Library Details

Organism: Homo Sapiens
Biosample: skin of body (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGA
Description: Part of ENCODE experiment ENCSR000AGA. The libraries contained in this experiment come from human fetal skin tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 2397.00 57.41 6.23 87.96 SNHG16-201 lncRNA skin of body (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 29.00 10.55 0.08 100.0 SNHG14-207 lncRNA skin of body (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 52805.00 79.15 137.30 96.96 SNORD105B-201 snoRNA skin of body (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 5374.00 56.48 13.97 76.24 SNORD121B-201 snoRNA skin of body (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 76968.00 94.58 200.12 99.28 SNORD127-201 snoRNA skin of body (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 411.00 0.51 1.07 100.0 SNORD127-201 snoRNA skin of body (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 89210.00 95.50 231.96 100.0 SNORD42B-201 snoRNA skin of body (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 50.00 0.35 0.13 100.0 RNY4P25-201 misc RNA skin of body (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1865.00 65.05 4.85 100.0 SNORD121A-201 snoRNA skin of body (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1807.00 20.78 4.70 67.3 SNORD126-201 snoRNA skin of body (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 6464.00 74.32 16.81 88.07 SNORD126-201 snoRNA skin of body (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 33573.00 90.73 87.29 95.6 SNORD124-201 snoRNA skin of body (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 48.00 2.21 0.12 100.0 SNHG12-201 retained intron skin of body (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 23421.00 46.85 60.90 89.67 RPL3-212 retained intron skin of body (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 18308.00 36.62 47.60 100.0 RPL3-212 retained intron skin of body (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 17398.00 97.08 45.24 100.0 SMC1A-204 retained intron skin of body (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 29525.00 85.22 76.77 97.88 RABGGTB-208 protein coding CDS not defined skin of body (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 336.00 2.57 0.87 100.0 DDX39B-219 retained intron skin of body (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 898.00 6.86 2.33 100.0 DDX39B-219 retained intron skin of body (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 5398.00 41.23 14.04 75.41 DDX39B-219 retained intron skin of body (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 9238.00 78.69 24.02 100.0 RPS8-206 protein coding CDS not defined skin of body (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 91778.00 94.79 238.63 99.24 RPL13-207 retained intron skin of body (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 747.00 0.77 1.94 100.0 RPL13-207 retained intron skin of body (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2233.00 0.42 5.81 49.25 EIF4A2-219 retained intron skin of body (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1577.00 0.30 4.10 57.7 EIF4A2-219 retained intron skin of body (Tissue)