ENCFF001RMI

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle tissue (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFZ
Description: Part of ENCODE experiment ENCSR000AFZ. The libraries contained in this experiment come from human fetal skeletal muscle tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 558.00 1.92 2.42 100.0 RPL17-214 retained intron skeletal muscle tissue (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 12356.75 42.43 53.59 49.45 RPL17-214 retained intron skeletal muscle tissue (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 15154.52 52.03 65.72 56.06 RPL17-214 retained intron skeletal muscle tissue (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 943.00 0.17 4.09 100.0 SNORD43-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 551742.00 98.75 2392.85 99.93 SNORD43-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 813.00 0.15 3.53 100.0 SNORD43-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 232.00 41.28 1.01 100.0 MIR151B-201 miRNA skeletal muscle tissue (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 113.00 1.19 0.49 100.0 SNORD3A-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 12052.00 90.39 52.27 100.0 SNORD92-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 1633.00 20.22 7.08 85.32 NSRP1-214 protein coding skeletal muscle tissue (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 5579.00 69.07 24.20 100.0 NSRP1-214 protein coding skeletal muscle tissue (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 6.00 0.02 0.03 100.0 MIR23AHG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 4149.00 15.19 17.99 92.84 MIR23AHG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 13443.00 49.20 58.30 96.09 MIR23AHG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 3835.00 14.04 16.63 83.7 MIR23AHG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1970.00 7.21 8.54 65.1 MIR23AHG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 6.00 25.00 0.03 100.0 MIR122HG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 78.00 57.78 0.34 100.0 ODAD3-204 nonsense mediated decay skeletal muscle tissue (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 800.00 2.61 3.47 100.0 VMP1-217 retained intron skeletal muscle tissue (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 11.00 0.04 0.05 100.0 VMP1-217 retained intron skeletal muscle tissue (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 15408.00 50.24 66.82 56.1 VMP1-217 retained intron skeletal muscle tissue (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 217.00 0.04 0.94 100.0 C19orf48P-203 retained intron skeletal muscle tissue (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 433179.26 79.17 1878.65 84.91 C19orf48P-203 retained intron skeletal muscle tissue (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 113108.29 20.67 490.54 20.93 C19orf48P-203 retained intron skeletal muscle tissue (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 1446.00 0.26 6.27 86.79 C19orf48P-203 retained intron skeletal muscle tissue (Tissue)