ENCFF001RMI

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle tissue (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFZ
Description: Part of ENCODE experiment ENCSR000AFZ. The libraries contained in this experiment come from human fetal skeletal muscle tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 342413.00 99.64 1485.01 99.86 MIR22HG-212 lncRNA skeletal muscle tissue (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 128.00 0.38 0.56 51.2 SNORD53B-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 31520.00 92.35 136.70 94.35 SNORD53B-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 122.00 0.36 0.53 48.8 SNORD53B-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 284.00 78.24 1.23 100.0 ENST00000578036 lncRNA skeletal muscle tissue (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 3484.00 90.54 15.11 100.0 RPL23A-207 protein coding skeletal muscle tissue (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 649.00 88.18 2.81 100.0 MIR744-201 miRNA skeletal muscle tissue (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 4936.00 78.24 21.41 100.0 MIR378C-201 miRNA skeletal muscle tissue (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 3392.00 58.52 14.71 86.6 MIR142HG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 135.00 2.33 0.59 100.0 MIR142HG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 1389.00 23.96 6.02 65.55 MIR142HG-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 258.00 3.00 1.12 100.0 SNORD3C-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 206.18 0.13 0.89 58.74 RPL23A-208 retained intron skeletal muscle tissue (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 147.61 0.09 0.64 52.53 RPL23A-208 retained intron skeletal muscle tissue (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 129091.00 79.30 559.85 89.71 RPL23A-208 retained intron skeletal muscle tissue (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 31497.00 19.35 136.60 91.56 RPL23A-208 retained intron skeletal muscle tissue (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 1925.00 0.40 8.35 100.0 MIR133A1HG-202 lncRNA skeletal muscle tissue (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 96396.00 60.45 418.06 94.59 RPL17-211 retained intron skeletal muscle tissue (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 5606.00 3.52 24.31 45.71 RPL17-211 retained intron skeletal muscle tissue (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 20912.00 13.11 90.69 41.96 RPL17-211 retained intron skeletal muscle tissue (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 301.00 0.19 1.31 100.0 RPL17-211 retained intron skeletal muscle tissue (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 32052.00 20.10 139.01 96.41 RPL17-211 retained intron skeletal muscle tissue (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 20256.00 58.52 87.85 80.55 ENST00000582320 lncRNA skeletal muscle tissue (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 4269.00 12.33 18.51 100.0 ENST00000582320 lncRNA skeletal muscle tissue (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 2779.00 8.03 12.05 100.0 ENST00000582320 lncRNA skeletal muscle tissue (Tissue)