ENCFF001RMI

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle tissue (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFZ
Description: Part of ENCODE experiment ENCSR000AFZ. The libraries contained in this experiment come from human fetal skeletal muscle tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 276.00 4.93 1.20 82.39 TMEM107-204 protein coding skeletal muscle tissue (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 898.00 16.05 3.89 70.27 TMEM107-204 protein coding skeletal muscle tissue (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 2192.00 71.87 9.51 92.22 SNHG16-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 550.00 18.03 2.39 100.0 SNHG16-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 186.00 20.00 0.81 100.0 SNHG14-207 lncRNA skeletal muscle tissue (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 53971.00 85.15 234.07 96.67 SNORD105B-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 4953.00 52.59 21.48 66.99 SNORD121B-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 11.00 0.02 0.05 100.0 SNORD127-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 60897.00 95.90 264.10 99.28 SNORD127-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 43212.00 94.87 187.41 100.0 SNORD42B-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 49.00 0.88 0.21 100.0 RNY4P25-201 misc RNA skeletal muscle tissue (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1447.00 69.40 6.28 100.0 SNORD121A-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 2997.00 77.88 13.00 90.22 SNORD126-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 660.00 17.15 2.86 65.93 SNORD126-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 19192.00 94.33 83.23 97.19 SNORD124-201 snoRNA skeletal muscle tissue (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 11.00 1.53 0.05 100.0 SNHG12-201 retained intron skeletal muscle tissue (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 7184.00 46.83 31.16 100.0 RPL3-212 retained intron skeletal muscle tissue (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 5246.00 34.19 22.75 79.34 RPL3-212 retained intron skeletal muscle tissue (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 14040.00 97.52 60.89 100.0 SMC1A-204 retained intron skeletal muscle tissue (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 14490.00 84.08 62.84 98.11 RABGGTB-208 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 3994.00 40.75 17.32 71.08 DDX39B-219 retained intron skeletal muscle tissue (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 475.00 4.85 2.06 100.0 DDX39B-219 retained intron skeletal muscle tissue (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 903.00 9.21 3.92 100.0 DDX39B-219 retained intron skeletal muscle tissue (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 4696.00 77.54 20.37 100.0 RPS8-206 protein coding CDS not defined skeletal muscle tissue (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 600.00 1.75 2.60 100.0 RPL13-207 retained intron skeletal muscle tissue (Tissue)