ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 187353.46 57.30 348.56 60.1 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 3301.00 1.01 6.14 100.0 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 204.00 0.06 0.38 100.0 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 2324.00 0.71 4.32 100.0 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 2431.00 0.74 4.52 100.0 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 10549.00 1.94 19.63 100.0 SNHG32-223 lncRNA metanephros (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 4749.00 0.87 8.84 100.0 SNHG32-223 lncRNA metanephros (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 481.00 0.09 0.89 100.0 SNHG32-223 lncRNA metanephros (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 5795.00 1.07 10.78 68.89 SNHG32-223 lncRNA metanephros (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 511357.00 94.21 951.36 100.0 SNHG32-223 lncRNA metanephros (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 99264.00 89.20 184.68 98.17 SNHG32-227 lncRNA metanephros (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 4365.00 3.92 8.12 100.0 SNHG32-227 lncRNA metanephros (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 464.00 0.42 0.86 100.0 SNHG32-227 lncRNA metanephros (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 504.00 0.45 0.94 100.0 SNHG32-227 lncRNA metanephros (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 112.00 65.12 0.21 100.0 B4GALT1-203 nonsense mediated decay metanephros (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 1064.00 3.48 1.98 100.0 ENST00000722183 lncRNA metanephros (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 14913.00 48.80 27.75 77.8 ENST00000722183 lncRNA metanephros (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 2542.00 8.32 4.73 100.0 ENST00000722183 lncRNA metanephros (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 19.00 86.36 0.04 100.0 MIR34BHG-202 lncRNA metanephros (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 6789.00 78.02 12.63 83.15 THBS3-AS1-228 lncRNA metanephros (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 2858.00 67.89 5.32 100.0 MIR200CHG-202 lncRNA metanephros (Tissue)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 696.00 16.53 1.29 100.0 MIR200CHG-202 lncRNA metanephros (Tissue)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 812.00 12.21 1.51 100.0 SNHG16-266 lncRNA metanephros (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 1346.00 20.23 2.50 100.0 SNHG16-266 lncRNA metanephros (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 914.00 13.74 1.70 100.0 SNHG16-266 lncRNA metanephros (Tissue)