ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 346.00 16.70 0.64 100.0 SNHG10-212 lncRNA metanephros (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 38294.04 50.54 71.24 53.12 SNHG19-202 lncRNA metanephros (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 33812.63 44.62 62.91 60.71 SNHG19-202 lncRNA metanephros (Tissue)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 5.59 0.01 0.01 93.24 SNHG19-202 lncRNA metanephros (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 4372.00 28.84 8.13 100.0 MIR222HG-206 lncRNA metanephros (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 7005.00 46.21 13.03 80.21 MIR222HG-206 lncRNA metanephros (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 250.00 1.65 0.47 100.0 MIR222HG-206 lncRNA metanephros (Tissue)
ENST00000688371.3 ENST00000688371.3_313_333_+ 313–333 1.00 12.50 0.00 100.0 MIR302CHG-205 lncRNA metanephros (Tissue)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 1.52 19.00 0.00 76.0 MIR302CHG-205 lncRNA metanephros (Tissue)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 2.00 25.00 0.00 100.0 MIR302CHG-205 lncRNA metanephros (Tissue)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 2.00 25.00 0.00 100.0 MIR302CHG-205 lncRNA metanephros (Tissue)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 1.00 0.28 0.00 100.0 SNHG8-214 lncRNA metanephros (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 592.00 2.97 1.10 76.29 MIR99AHG-370 lncRNA metanephros (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 18491.00 92.76 34.40 98.12 MIR99AHG-370 lncRNA metanephros (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 835.00 94.24 1.55 100.0 HPS4-237 retained intron metanephros (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 258.00 85.15 0.48 100.0 MEG8-253 lncRNA metanephros (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 48.00 8.12 0.09 100.0 MEG9-206 lncRNA metanephros (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 74.00 12.52 0.14 100.0 MEG9-206 lncRNA metanephros (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 180.00 30.46 0.33 100.0 MEG9-206 lncRNA metanephros (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 433.00 12.88 0.81 100.0 DNAJC5-203 nonsense mediated decay metanephros (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 162.00 25.51 0.30 100.0 ENST00000707189 TEC metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 361.00 0.11 0.67 100.0 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 129301.74 39.55 240.56 42.95 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 47.00 0.01 0.09 100.0 MIR17HG-214 lncRNA metanephros (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 224.00 0.07 0.42 100.0 MIR17HG-214 lncRNA metanephros (Tissue)